Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   KFU71_RS09670 Genome accession   NZ_CP073924
Coordinates   2001271..2001927 (+) Length   218 a.a.
NCBI ID   WP_000611338.1    Uniprot ID   -
Organism   Escherichia coli strain MB165     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1996271..2006927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU71_RS09640 (KFU71_09590) dcyD 1997150..1998136 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  KFU71_RS09645 (KFU71_09595) tcyL 1998151..1998819 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  KFU71_RS09650 (KFU71_09600) tcyN 1998816..1999568 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  KFU71_RS09655 (KFU71_09605) sdiA 1999798..2000520 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  KFU71_RS09660 (KFU71_09610) yecF 2000588..2000812 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  KFU71_RS09665 (KFU71_09615) yecU 2000799..2000975 (-) 177 WP_032159072.1 protein YecU -
  KFU71_RS24600 - 2001013..2001129 (-) 117 WP_001302039.1 hypothetical protein -
  KFU71_RS09670 (KFU71_09620) letA 2001271..2001927 (+) 657 WP_000611338.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  KFU71_RS09675 (KFU71_09625) uvrC 2001924..2003756 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  KFU71_RS09680 (KFU71_09630) pgsA 2003813..2004361 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KFU71_RS09700 (KFU71_09650) yecA 2005011..2005676 (+) 666 WP_000847880.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23908.65 Da        Isoelectric Point: 6.9614

>NTDB_id=488036 KFU71_RS09670 WP_000611338.1 2001271..2001927(+) (letA) [Escherichia coli strain MB165]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNSVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=488036 KFU71_RS09670 WP_000611338.1 2001271..2001927(+) (letA) [Escherichia coli strain MB165]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATTCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.691

94.954

0.491
  letA Legionella pneumophila strain ERS1305867

51.691

94.954

0.491