Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KFU71_RS06265 Genome accession   NZ_CP073924
Coordinates   1272340..1273077 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain MB165     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1267340..1278077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU71_RS06235 (KFU71_06205) yfiL 1267470..1267863 (-) 394 Protein_1226 DUF2799 domain-containing protein -
  KFU71_RS06240 (KFU71_06210) aroF 1268073..1269143 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KFU71_RS06245 (KFU71_06215) tyrA 1269154..1270275 (+) 1122 WP_000225217.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KFU71_RS06250 (KFU71_06220) pheA 1270318..1271478 (-) 1161 WP_000200098.1 bifunctional chorismate mutase/prephenate dehydratase -
  KFU71_RS06255 (KFU71_06225) pheL 1271577..1271624 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KFU71_RS06260 (KFU71_06230) raiA 1271728..1272069 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KFU71_RS06265 (KFU71_06235) comL 1272340..1273077 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KFU71_RS06270 (KFU71_06240) rluD 1273212..1274192 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KFU71_RS06275 (KFU71_06245) yfiH 1274189..1274920 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  KFU71_RS06280 (KFU71_06250) clpC 1275050..1277623 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=488024 KFU71_RS06265 WP_000197686.1 1272340..1273077(-) (comL) [Escherichia coli strain MB165]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=488024 KFU71_RS06265 WP_000197686.1 1272340..1273077(-) (comL) [Escherichia coli strain MB165]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376