Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KEH54_RS05880 Genome accession   NZ_CP073768
Coordinates   1211211..1211948 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain SH19PTE6     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1206211..1216948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEH54_RS05865 (KEH54_05865) - 1206533..1208236 (+) 1704 WP_077760538.1 hypothetical protein -
  KEH54_RS05870 (KEH54_05870) - 1209268..1210455 (-) 1188 WP_032187555.1 acyltransferase -
  KEH54_RS05875 (KEH54_05875) raiA 1210599..1210940 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KEH54_RS05880 (KEH54_05880) comL 1211211..1211948 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KEH54_RS05885 (KEH54_05885) rluD 1212083..1213063 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KEH54_RS05890 (KEH54_05890) yfiH 1213060..1213791 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  KEH54_RS05895 (KEH54_05895) clpC 1213921..1216494 (+) 2574 WP_064670483.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=487942 KEH54_RS05880 WP_000197686.1 1211211..1211948(-) (comL) [Escherichia coli strain SH19PTE6]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=487942 KEH54_RS05880 WP_000197686.1 1211211..1211948(-) (comL) [Escherichia coli strain SH19PTE6]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376