Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   IF749_RS07480 Genome accession   NZ_CP062334
Coordinates   1482780..1483349 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_NP_164     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1477780..1488349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF749_RS07440 (IF749_07445) - 1478254..1478862 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  IF749_RS07445 (IF749_07450) rplL 1479037..1479405 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  IF749_RS07450 (IF749_07455) rplJ 1479448..1479948 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  IF749_RS07455 (IF749_07460) rplA 1480220..1480912 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  IF749_RS07460 (IF749_07465) rplK 1481120..1481542 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  IF749_RS07465 (IF749_07470) nusG 1481723..1482271 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  IF749_RS07470 (IF749_07475) secE 1482284..1482466 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  IF749_RS07475 (IF749_07480) rpmG 1482522..1482665 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  IF749_RS07480 (IF749_07485) sigH 1482780..1483349 (-) 570 WP_000872876.1 RNA polymerase sigma factor Regulator
  IF749_RS07485 (IF749_07490) - 1483430..1483954 (-) 525 WP_000664738.1 NYN domain-containing protein -
  IF749_RS07490 (IF749_07495) rlmB 1483954..1484700 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IF749_RS07495 (IF749_07500) - 1484708..1485112 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  IF749_RS07500 (IF749_07505) cysS 1485105..1486505 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  IF749_RS07505 (IF749_07510) cysE 1486489..1487136 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=487918 IF749_RS07480 WP_000872876.1 1482780..1483349(-) (sigH) [Staphylococcus aureus strain NAS_NP_164]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=487918 IF749_RS07480 WP_000872876.1 1482780..1483349(-) (sigH) [Staphylococcus aureus strain NAS_NP_164]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984