Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   IF749_RS02725 Genome accession   NZ_CP062334
Coordinates   483890..484387 (+) Length   165 a.a.
NCBI ID   WP_029642894.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_NP_164     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 478890..489387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF749_RS02685 (IF749_02685) - 478934..479920 (+) 987 WP_000161314.1 ROK family glucokinase -
  IF749_RS02690 (IF749_02690) - 479920..480249 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  IF749_RS02695 (IF749_02695) - 480246..480869 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  IF749_RS02700 (IF749_02700) comGA 480921..481895 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  IF749_RS02705 (IF749_02705) comGB 481867..482937 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  IF749_RS02710 (IF749_02710) comGC 482951..483262 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  IF749_RS02715 (IF749_02715) comGD 483240..483686 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  IF749_RS02720 (IF749_02720) comGE 483673..483972 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  IF749_RS02725 (IF749_02725) comGF 483890..484387 (+) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  IF749_RS02730 (IF749_02730) - 484484..484630 (+) 147 WP_001789879.1 hypothetical protein -
  IF749_RS02735 (IF749_02735) - 484620..485144 (+) 525 WP_001015119.1 shikimate kinase -
  IF749_RS02740 (IF749_02740) gcvT 485303..486394 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  IF749_RS02745 (IF749_02745) gcvPA 486414..487760 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  IF749_RS02750 (IF749_02750) gcvPB 487753..489225 (+) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19196.92 Da        Isoelectric Point: 10.2192

>NTDB_id=487906 IF749_RS02725 WP_029642894.1 483890..484387(+) (comGF) [Staphylococcus aureus strain NAS_NP_164]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTNVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=487906 IF749_RS02725 WP_029642894.1 483890..484387(+) (comGF) [Staphylococcus aureus strain NAS_NP_164]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAAATGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(70-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

97.576

100

0.976
  comGF Staphylococcus aureus MW2

97.576

100

0.976