Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   J6O57_RS05990 Genome accession   NZ_CP073718
Coordinates   1219393..1221054 (-) Length   553 a.a.
NCBI ID   WP_000880892.1    Uniprot ID   -
Organism   Escherichia coli strain CX08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1214393..1226054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O57_RS05955 (J6O57_05895) - 1215022..1215480 (-) 459 WP_016809720.1 hypothetical protein -
  J6O57_RS05960 (J6O57_05900) - 1215510..1216709 (-) 1200 WP_016809721.1 integrase domain-containing protein -
  J6O57_RS05970 (J6O57_05910) smpB 1217471..1217953 (-) 483 WP_057108212.1 SsrA-binding protein SmpB -
  J6O57_RS05975 (J6O57_05915) ratA 1218124..1218561 (+) 438 WP_001300750.1 type II toxin-antitoxin system toxin RatA -
  J6O57_RS05980 (J6O57_05920) yfjF 1218551..1218841 (+) 291 WP_001117843.1 RnfH family protein -
  J6O57_RS05985 (J6O57_05925) bamE 1218903..1219244 (-) 342 WP_001203437.1 outer membrane protein assembly factor BamE -
  J6O57_RS05990 (J6O57_05930) recN 1219393..1221054 (-) 1662 WP_000880892.1 DNA repair protein RecN Machinery gene
  J6O57_RS05995 (J6O57_05935) nadK 1221140..1222018 (-) 879 WP_001059169.1 NAD(+) kinase -
  J6O57_RS06000 (J6O57_05940) grpE 1222141..1222734 (+) 594 WP_001296310.1 nucleotide exchange factor GrpE -
  J6O57_RS06005 (J6O57_05945) yfjD 1222788..1224074 (-) 1287 WP_010723175.1 HlyC/CorC family transporter -
  J6O57_RS06010 (J6O57_05950) ypjD 1224095..1224886 (-) 792 WP_001338897.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61379.33 Da        Isoelectric Point: 5.2547

>NTDB_id=487773 J6O57_RS05990 WP_000880892.1 1219393..1221054(-) (recN) [Escherichia coli strain CX08]
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRNGAARADLCARFSLKDTPAALRWL
EENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDHLDLDPNRLFELEQRLSKQISLARKHHVSPE
ALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALETARALHQQRQQYAEELAQLITDSMHALSMPHGQFTIDVKFD
EHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLDKKARLQELARLLGGSEVTRNTLANAKELLAA

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=487773 J6O57_RS05990 WP_000880892.1 1219393..1221054(-) (recN) [Escherichia coli strain CX08]
ATGTTGGCACAACTGACCATCAGCAACTTTGCTATCGTTCGTGAGCTTGAGATTGATTTTCACAGCGGCATGACCGTAAT
AACCGGTGAAACCGGCGCGGGTAAATCTATTGCGATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGAGCTGAAGCCGACA
TGGTGCGTAATGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGCCCTGCGCTGGCTG
GAAGAAAACCAGCTTGAAGACGGGCATGAATGTTTGCTTCGTCGCGTAATCAGCAGCGATGGTCGCTCCCGTGGTTTCAT
CAACGGTACAGCTGTTCCTCTGTCACAACTGCGCGAACTGGGTCAGTTGCTGATTCAGATCCATGGTCAGCACGCTCATC
AGTTACTCACCAAACCCGAGCACCAAAAATTCCTGCTTGATGGCTATGCCAATGAAACCTCTCTGCTTCAGGAAATGACC
GCACGTTATCAGTTGTGGCATCAAAGCTGCCGCGACCTCGCGCATCATCAACAGTTAAGTCAGGAACGCGCCGCCCGTGC
GGAACTACTGCAATACCAATTGAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAGCAAATCGACGAAGAGT
ACAAACGTCTGGCGAACAGCGGTCAATTGCTGACTACCAGCCAGAATGCATTGGCATTAATGGCCGACGGTGAAGACGCA
AACCTGCAAAGTCAGCTTTACACGGCTAAACAACTGGTGAGCGAATTGATTGGCATGGACAGCAAACTGTCCGGCGTACT
TGATATGCTGGAAGAAGCTACCATCCAGATTGCTGAAGCCAGCGATGAACTTCGCCACTACTGCGATCATCTGGATCTCG
ATCCCAACCGACTGTTTGAACTTGAACAGCGCCTCTCAAAACAGATTTCGCTGGCACGTAAACATCACGTCAGCCCTGAG
GCATTACCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGATCAGGCCGACTCACAAGAAACGCTCGC
GCTGGCGGTAACGAAACATCATCAGCAGGCACTGGAAACCGCGCGCGCATTACACCAACAACGCCAGCAATATGCAGAAG
AACTTGCACAGCTGATCACCGACAGTATGCATGCGCTCTCAATGCCGCATGGGCAGTTTACGATCGATGTTAAATTTGAC
GAGCATCACCTGGGCGCTGACGGTGCCGATCGTATTGAATTTCGGGTAACCACCAACCCTGGTCAGCCAATGCAGCCTAT
TGCCAAAGTCGCATCCGGTGGTGAATTGTCCCGCATCGCACTGGCAATCCAGGTCATTACCGCGCGTAAAATGGAAACCC
CGGCACTGATTTTTGATGAAGTGGATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTC
GGCGAATCAACTCAGGTAATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAA
AGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGGATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGC
TTGGTGGCAGCGAAGTCACACGTAACACACTGGCGAATGCGAAAGAACTGCTTGCGGCGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

38.336

100

0.383
  recN Bacillus subtilis subsp. subtilis str. 168

34.904

100

0.362