Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   KEF49_RS19200 Genome accession   NZ_CP073635
Coordinates   3800055..3800849 (-) Length   264 a.a.
NCBI ID   WP_065982787.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3795055..3805849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS19185 (KEF49_19185) - 3796225..3797643 (-) 1419 WP_212099952.1 HAMP domain-containing sensor histidine kinase -
  KEF49_RS19190 (KEF49_19190) - 3797640..3798263 (-) 624 WP_212099955.1 response regulator transcription factor -
  KEF49_RS19195 (KEF49_19195) htrA 3798772..3799968 (-) 1197 WP_212099958.1 S1C family serine protease Regulator
  KEF49_RS19200 (KEF49_19200) vicX 3800055..3800849 (-) 795 WP_065982787.1 MBL fold metallo-hydrolase Regulator
  KEF49_RS19205 (KEF49_19205) yycI 3800865..3801704 (-) 840 WP_212099961.1 two-component system regulatory protein YycI -
  KEF49_RS19210 (KEF49_19210) yycH 3801691..3803049 (-) 1359 WP_065982789.1 two-component system activity regulator YycH -
  KEF49_RS19215 (KEF49_19215) walK 3803039..3804874 (-) 1836 WP_065982790.1 cell wall metabolism sensor histidine kinase WalK -
  KEF49_RS19220 (KEF49_19220) walR 3804881..3805588 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29146.19 Da        Isoelectric Point: 5.7992

>NTDB_id=487698 KEF49_RS19200 WP_065982787.1 3800055..3800849(-) (vicX) [Bacillus amyloliquefaciens strain Ba13]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMEQIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDSTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=487698 KEF49_RS19200 WP_065982787.1 3800055..3800849(-) (vicX) [Bacillus amyloliquefaciens strain Ba13]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCCTTTCT
GGTGGATGCCGGCCTGAGCGGAAAAGCGATGGACGGGCTGATGGAGCAAATCGGCCGTAAGATAGACGACGTGGACGGCA
TCTTTGTCACTCATGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTTCCGGTATACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGACACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTCTATGTTTTCC
ATTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGGTATGTGAGCGACAGAATGAAAGGTATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATCAAACGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCAAATGAAGACGCGGCGCTCGCCATGACTGATGTCATCGGCGACAGCACATCACGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCGGGGGAAACGTTTCAATTATTTGATACCGATCCGAAAATCCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527