Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KEF49_RS15075 Genome accession   NZ_CP073635
Coordinates   2961429..2962073 (-) Length   214 a.a.
NCBI ID   WP_014472195.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2956429..2967073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS15040 (KEF49_15040) - 2957614..2958045 (+) 432 WP_045509497.1 Na(+)/H(+) antiporter subunit B -
  KEF49_RS15045 (KEF49_15045) - 2958045..2958386 (+) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  KEF49_RS15050 (KEF49_15050) - 2958379..2959860 (+) 1482 WP_065982195.1 Na+/H+ antiporter subunit D -
  KEF49_RS15055 (KEF49_15055) - 2959866..2960342 (+) 477 WP_212099076.1 Na+/H+ antiporter subunit E -
  KEF49_RS15060 (KEF49_15060) - 2960342..2960626 (+) 285 WP_045509491.1 Na(+)/H(+) antiporter subunit F1 -
  KEF49_RS15065 (KEF49_15065) mnhG 2960610..2960984 (+) 375 WP_115997042.1 monovalent cation/H(+) antiporter subunit G -
  KEF49_RS15070 (KEF49_15070) - 2961024..2961407 (-) 384 WP_212099079.1 hotdog fold thioesterase -
  KEF49_RS15075 (KEF49_15075) comA 2961429..2962073 (-) 645 WP_014472195.1 response regulator transcription factor Regulator
  KEF49_RS15080 (KEF49_15080) - 2962154..2964508 (-) 2355 Protein_2934 histidine kinase -
  KEF49_RS15085 (KEF49_15085) comX 2964486..2964656 (-) 171 WP_212099082.1 competence pheromone ComX -
  KEF49_RS15090 (KEF49_15090) comQ 2964671..2965579 (-) 909 WP_249199260.1 polyprenyl synthetase family protein Regulator
  KEF49_RS15095 (KEF49_15095) degQ 2965710..2965850 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  KEF49_RS15100 (KEF49_15100) - 2966315..2966656 (+) 342 WP_115997039.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24253.65 Da        Isoelectric Point: 4.9953

>NTDB_id=487671 KEF49_RS15075 WP_014472195.1 2961429..2962073(-) (comA) [Bacillus amyloliquefaciens strain Ba13]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=487671 KEF49_RS15075 WP_014472195.1 2961429..2962073(-) (comA) [Bacillus amyloliquefaciens strain Ba13]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCACGGCGCCATCAGCAAAAC
TGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAATGTAC
TATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86