Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   KEF49_RS13095 Genome accession   NZ_CP073635
Coordinates   2601019..2602791 (-) Length   590 a.a.
NCBI ID   WP_212098592.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2596019..2607791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS13075 (KEF49_13075) sdhA 2596231..2597991 (-) 1761 WP_013353100.1 succinate dehydrogenase flavoprotein subunit -
  KEF49_RS13080 (KEF49_13080) sdhC 2598025..2598633 (-) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  KEF49_RS13085 (KEF49_13085) - 2598930..2599376 (+) 447 WP_013353101.1 YslB family protein -
  KEF49_RS13090 (KEF49_13090) - 2599423..2600652 (-) 1230 WP_212098589.1 aspartate kinase -
  KEF49_RS13095 (KEF49_13095) uvrC 2601019..2602791 (-) 1773 WP_212098592.1 excinuclease ABC subunit UvrC Machinery gene
  KEF49_RS13100 (KEF49_13100) trxA 2602937..2603251 (-) 315 WP_003152560.1 thioredoxin -
  KEF49_RS13105 (KEF49_13105) - 2603403..2604893 (-) 1491 WP_212098595.1 alpha-N-arabinofuranosidase -
  KEF49_RS13110 (KEF49_13110) - 2605107..2606084 (-) 978 WP_212098599.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  KEF49_RS13115 (KEF49_13115) - 2606116..2606889 (-) 774 WP_212098602.1 electron transfer flavoprotein subunit beta/FixA family protein -
  KEF49_RS13120 (KEF49_13120) - 2606903..2607682 (-) 780 WP_212098605.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68332.13 Da        Isoelectric Point: 9.4913

>NTDB_id=487664 KEF49_RS13095 WP_212098592.1 2601019..2602791(-) (uvrC) [Bacillus amyloliquefaciens strain Ba13]
MNKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNRELVEDITRFLKGGHNEVKKELEEKMAEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTYIGQFYSKNNHFLPKEILVPDSVDRDMISEL
LETAVHQPKKGPKKELLLLAHKNAKIALQEKFSLIERDEERSIGAAERLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYSRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPVFLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQLLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=487664 KEF49_RS13095 WP_212098592.1 2601019..2602791(-) (uvrC) [Bacillus amyloliquefaciens strain Ba13]
ATGAATAAACAACTGAAAGAAAAGCTGGCCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGACCGTCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAGGTGCTGAAAAACAGGGTGCGATCCTATTTCACCGGTTCTCACGACGCAAAAACCC
AAAGGCTTGTGACGGAGATTGAGGACTTTGAATACATCGTGACCTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGCCATCCGCGGCTTATTGTCACCCGGAATGTCAAAAAAGACAAAGGACGCTATTTCGGCCCGTACCCGAATGTTCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTATACCCGCTCAGGAAGTGCTCGAAGCTTCCGGACCGCGTCTGTCTT
TATTATCATCTCGGACAATGCCTCGCTCCTTGTGTTAAGGATATTTCTGAGGAGACCAACCGCGAGCTGGTTGAAGATAT
CACCCGTTTTTTAAAGGGAGGGCATAACGAGGTCAAAAAAGAGCTTGAAGAGAAAATGGCAGAGGCGGCGGAAAAACTTG
AATTTGAACGGGCTAAAGAATTCCGCGATCAGCTTGCTCACATCGAATCGACGATGGAGAAGCAGAAAATGACCATGAAT
GACCTTTTGGACCGCGATGTGTTTGCTTATGCCTACGATAAAGGCTGGATGTGCGTTCAGGTCTTTTTCATACGCCAAGG
AAAGCTGATTGAACGCGATGTCAGCATGTTTCCGATGTATCAGGAAGCGGATGAAGAATTTCTGACCTACATCGGCCAGT
TCTATTCTAAAAACAATCACTTTCTGCCTAAAGAAATTCTGGTGCCTGACAGCGTGGACAGGGACATGATCAGCGAGCTT
TTGGAAACCGCCGTGCATCAGCCGAAAAAAGGCCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
TCTGCAGGAAAAATTCTCATTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCTGCCGAACGGCTCGGTGAGGCGCTGA
ACATTTACACGCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGTACAAACCCTGTGTCGGCCATGATTGTC
TTTATTGACGGTAAGCCCAATAAAAAGGAATACCGCAAATATAAAATTAAAACCGTAACAGGGCCTGACGATTACGGCTC
TATGAGGGAAGTCGTCAGAAGAAGATATTCGAGGGTGCTCCGCGAAAATCTCCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGGCAGATTAATGCGGCGCGCGACGTGCTCGAAAATGAGCTCGGCCTTGATGTCCCGGTAGCGGGATTGGCG
AAGGATGATAAACACCGAACATCCAACCTTTTGATCGGCGATCCGCTTGAACCGGTGTTTCTGGAGCGGAACAGCCAGGA
ATTTTACCTGCTTCAGCGCATTCAGGACGAAGTTCACCGCTTTGCGATCAGTTTTCACAGGCAGATCCGGGGAAAAAGCG
CCTTTCAATCCGTTTTGGATGATATCCCGGGAATCGGCGAAAAACGCAAAAAAATGCTCTTAAAGCATTTCGGATCTGTT
AAAAAGATGAAGGAAGCAAGCCTTGACGATATTAAAAAAGCCGGTGTGCCGGCTGCGGCGGCTCAGCTGCTGTTTGAAAA
ATTGAAAAAATAG

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrB/uvrC motif (UVR)

(197-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.694

99.661

0.595
  uvrC Streptococcus pneumoniae R6

59.354

99.661

0.592
  uvrC Streptococcus pneumoniae D39

59.354

99.661

0.592