Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   IF775_RS05200 Genome accession   NZ_CP062318
Coordinates   1045711..1046697 (-) Length   328 a.a.
NCBI ID   WP_000959288.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_132     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1040711..1051697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF775_RS05175 (IF775_05165) - 1040971..1041318 (-) 348 WP_001242102.1 hypothetical protein -
  IF775_RS05180 (IF775_05170) - 1041504..1042097 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  IF775_RS05185 (IF775_05175) - 1042201..1042566 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  IF775_RS05190 (IF775_05180) yjbH 1042589..1043395 (+) 807 WP_000896696.1 protease adaptor protein YjbH -
  IF775_RS05195 (IF775_05185) pepF 1043855..1045663 (-) 1809 WP_000082725.1 oligoendopeptidase F -
  IF775_RS05200 (IF775_05190) coiA 1045711..1046697 (-) 987 WP_000959288.1 competence protein CoiA family protein Machinery gene
  IF775_RS05205 (IF775_05195) mecA 1046818..1047537 (-) 720 WP_001217728.1 adaptor protein MecA -
  IF775_RS05210 (IF775_05200) spxA 1047909..1048304 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  IF775_RS05215 (IF775_05205) trpS 1048599..1049588 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  IF775_RS05220 (IF775_05210) opp4C 1049630..1050511 (-) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  IF775_RS05225 (IF775_05215) opp4B 1050523..1051485 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38899.50 Da        Isoelectric Point: 9.5881

>NTDB_id=487625 IF775_RS05200 WP_000959288.1 1045711..1046697(-) (coiA) [Staphylococcus aureus strain NAS_OP_132]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFTINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=487625 IF775_RS05200 WP_000959288.1 1045711..1046697(-) (coiA) [Staphylococcus aureus strain NAS_OP_132]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCA
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.78

100

0.988
  coiA Staphylococcus aureus N315

98.171

100

0.982