Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   IF775_RS02355 Genome accession   NZ_CP062318
Coordinates   438289..438735 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_132     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 433289..443735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF775_RS02320 (IF775_02310) - 433783..433986 (+) 204 WP_000087561.1 YqgQ family protein -
  IF775_RS02325 (IF775_02315) - 433983..434969 (+) 987 WP_000161314.1 ROK family glucokinase -
  IF775_RS02330 (IF775_02320) - 434969..435298 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  IF775_RS02335 (IF775_02325) - 435295..435918 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  IF775_RS02340 (IF775_02330) comGA 435970..436944 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  IF775_RS02345 (IF775_02335) comGB 436916..437986 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  IF775_RS02350 (IF775_02340) comGC 438000..438311 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  IF775_RS02355 (IF775_02345) comGD 438289..438735 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  IF775_RS02360 (IF775_02350) comGE 438722..439021 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  IF775_RS02365 (IF775_02355) comGF 438939..439436 (+) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  IF775_RS02370 (IF775_02360) - 439533..439679 (+) 147 WP_001789879.1 hypothetical protein -
  IF775_RS02375 (IF775_02365) - 439669..440193 (+) 525 WP_001015119.1 shikimate kinase -
  IF775_RS02380 (IF775_02370) gcvT 440352..441443 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  IF775_RS02385 (IF775_02375) gcvPA 441463..442809 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=487616 IF775_RS02355 WP_001788899.1 438289..438735(+) (comGD) [Staphylococcus aureus strain NAS_OP_132]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=487616 IF775_RS02355 WP_001788899.1 438289..438735(+) (comGD) [Staphylococcus aureus strain NAS_OP_132]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1