Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   KEF49_RS07180 Genome accession   NZ_CP073635
Coordinates   1424353..1424802 (+) Length   149 a.a.
NCBI ID   WP_065981388.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1419353..1429802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS07140 (KEF49_07140) ctaE 1419474..1420097 (+) 624 WP_013352146.1 cytochrome c oxidase subunit III -
  KEF49_RS07145 (KEF49_07145) ctaF 1420100..1420432 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  KEF49_RS07150 (KEF49_07150) ctaG 1420457..1421341 (+) 885 WP_212101240.1 cytochrome c oxidase assembly factor CtaG -
  KEF49_RS07155 (KEF49_07155) - 1421375..1421734 (-) 360 WP_212101243.1 YugN family protein -
  KEF49_RS07160 (KEF49_07160) - 1421875..1422318 (+) 444 WP_212101246.1 CBS domain-containing protein -
  KEF49_RS07165 (KEF49_07165) - 1422403..1423443 (+) 1041 WP_212101249.1 CAP domain-containing protein -
  KEF49_RS07170 (KEF49_07170) - 1423616..1424026 (+) 411 WP_065981387.1 YlbD family protein -
  KEF49_RS07175 (KEF49_07175) - 1424042..1424281 (+) 240 WP_003154475.1 YlbE-like family protein -
  KEF49_RS07180 (KEF49_07180) ylbF 1424353..1424802 (+) 450 WP_065981388.1 YlbF family regulator Regulator
  KEF49_RS07185 (KEF49_07185) - 1424861..1425133 (+) 273 WP_013352153.1 YlbG family protein -
  KEF49_RS07190 (KEF49_07190) rsmD 1425432..1425986 (+) 555 WP_065981389.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KEF49_RS07195 (KEF49_07195) coaD 1425991..1426473 (+) 483 WP_013352154.1 pantetheine-phosphate adenylyltransferase -
  KEF49_RS07200 (KEF49_07200) ylbJ 1426491..1427720 (-) 1230 WP_212101252.1 sporulation integral membrane protein YlbJ -
  KEF49_RS07205 (KEF49_07205) - 1427898..1428677 (+) 780 WP_212101255.1 patatin-like phospholipase family protein -
  KEF49_RS07210 (KEF49_07210) sepM 1428683..1429705 (+) 1023 WP_212101258.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16890.98 Da        Isoelectric Point: 4.8089

>NTDB_id=487613 KEF49_RS07180 WP_065981388.1 1424353..1424802(+) (ylbF) [Bacillus amyloliquefaciens strain Ba13]
MYATIESVRLQSEAEQLAGMILQSETAENYRDCYKRLQEDEEARRIIRSFMSIKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=487613 KEF49_RS07180 WP_065981388.1 1424353..1424802(+) (ylbF) [Bacillus amyloliquefaciens strain Ba13]
ATGTATGCAACAATTGAGTCCGTCAGGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCACGGCGGATTATTCGTTCTTTTATGAGCATTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATATCATCCTGACTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTGGATTTAAATGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCACTGCTTGACGAGAT
CAGCATCGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

89.262

100

0.893