Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IF782_RS13370 Genome accession   NZ_CP062312
Coordinates   2694268..2694663 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_163     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2689268..2699663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF782_RS13340 (IF782_13285) - 2690529..2690933 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  IF782_RS13345 (IF782_13290) - 2691269..2691361 (+) 93 WP_031824610.1 hypothetical protein -
  IF782_RS13350 (IF782_13295) - 2691493..2691726 (+) 234 WP_000384524.1 DUF1146 family protein -
  IF782_RS13355 (IF782_13300) murA 2691837..2693102 (+) 1266 WP_000358010.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IF782_RS13360 (IF782_13305) fabZ 2693136..2693576 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IF782_RS13365 (IF782_13310) - 2693634..2694074 (-) 441 WP_000846746.1 YwpF-like family protein -
  IF782_RS13370 (IF782_13315) ssb 2694268..2694663 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  IF782_RS13375 (IF782_13320) sceD 2695052..2695747 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  IF782_RS13380 (IF782_13325) tenA 2696133..2696822 (+) 690 WP_000396067.1 thiaminase II -
  IF782_RS13385 (IF782_13330) thiD 2696815..2697645 (+) 831 WP_000594967.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IF782_RS13390 (IF782_13335) thiM 2697629..2698420 (+) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  IF782_RS13395 (IF782_13340) thiE 2698422..2699063 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=487557 IF782_RS13370 WP_000932694.1 2694268..2694663(+) (ssb) [Staphylococcus aureus strain NAS_OP_163]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=487557 IF782_RS13370 WP_000932694.1 2694268..2694663(+) (ssb) [Staphylococcus aureus strain NAS_OP_163]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992