Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IF782_RS02155 Genome accession   NZ_CP062312
Coordinates   401361..402047 (+) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_163     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396361..407047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF782_RS02120 (IF782_02130) yqeH 396888..397988 (+) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -
  IF782_RS02125 (IF782_02135) aroE 398002..398808 (+) 807 WP_000666748.1 shikimate dehydrogenase -
  IF782_RS02130 (IF782_02140) yhbY 398812..399102 (+) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  IF782_RS02135 (IF782_02145) nadD 399105..399674 (+) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  IF782_RS02140 (IF782_02150) yqeK 399664..400248 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  IF782_RS02145 (IF782_02155) rsfS 400249..400602 (+) 354 WP_001088020.1 ribosome silencing factor -
  IF782_RS02150 (IF782_02160) - 400605..401321 (+) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  IF782_RS02155 (IF782_02165) comEA 401361..402047 (+) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  IF782_RS02160 (IF782_02170) - 402139..402600 (+) 462 WP_000439693.1 ComE operon protein 2 -
  IF782_RS02165 (IF782_02175) comEC 402605..404806 (+) 2202 WP_001804765.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF782_RS02170 (IF782_02180) holA 404863..405837 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  IF782_RS02175 (IF782_02185) rpsT 405882..406133 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=487527 IF782_RS02155 WP_001788928.1 401361..402047(+) (comEA) [Staphylococcus aureus strain NAS_OP_163]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=487527 IF782_RS02155 WP_001788928.1 401361..402047(+) (comEA) [Staphylococcus aureus strain NAS_OP_163]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969