Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   IHQ43_RS21405 Genome accession   NZ_CP062253
Coordinates   4827161..4829404 (-) Length   747 a.a.
NCBI ID   WP_192562024.1    Uniprot ID   -
Organism   Pseudomonas gozinkensis strain IzPS32d     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4822161..4834404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHQ43_RS21370 murB 4822561..4823580 (-) 1020 WP_192562021.1 UDP-N-acetylmuramate dehydrogenase -
  IHQ43_RS21375 - 4823577..4824041 (-) 465 WP_064598568.1 low molecular weight protein-tyrosine-phosphatase -
  IHQ43_RS21380 kdsB 4824041..4824805 (-) 765 WP_192562022.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IHQ43_RS21385 - 4824802..4824987 (-) 186 WP_003174668.1 Trm112 family protein -
  IHQ43_RS21390 lpxK 4825012..4826022 (-) 1011 WP_192562023.1 tetraacyldisaccharide 4'-kinase -
  IHQ43_RS21395 - 4826022..4826450 (-) 429 WP_085745066.1 biopolymer transporter ExbD -
  IHQ43_RS21400 exbB 4826447..4827082 (-) 636 WP_162803842.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IHQ43_RS21405 comA 4827161..4829404 (-) 2244 WP_192562024.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IHQ43_RS21410 - 4829541..4830059 (+) 519 WP_192562025.1 DUF2062 domain-containing protein -
  IHQ43_RS21415 - 4830114..4830893 (-) 780 WP_192562026.1 ABC transporter permease -
  IHQ43_RS21420 - 4830890..4831822 (-) 933 WP_192562027.1 ABC transporter ATP-binding protein -
  IHQ43_RS21425 - 4831956..4832579 (-) 624 WP_192562028.1 glutathione S-transferase -
  IHQ43_RS21430 - 4832623..4833282 (-) 660 WP_064598586.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 81962.01 Da        Isoelectric Point: 10.3039

>NTDB_id=487392 IHQ43_RS21405 WP_192562024.1 4827161..4829404(-) (comA) [Pseudomonas gozinkensis strain IzPS32d]
MRTGMMALAVGLLAPVFLPALPPVGLMLVLPWVALMMLPFRSYPLAFLLFGLAWAGFSAQLALNDRLPSRLDGETRWVEG
RVVGLAQNAEGVVRFELADASSRHEKLPSLMRLAWYAGPEVKSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKDGQRLAPAQWAWRDSIRQRLLAVDAQGRNGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGLLAALMYAL
VAGLARFGFWPLRWPWLPWACGLAIAAALGYGLLAGFDVPVRRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLMDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPVLVTLSLPISLSGPLANLLAVPWISFAVLPPAL
LGTLLLPIPYVGEGLLWLAGGLIEGLFRALALIAGRWPAWVPTTMEWWGWALGGLGALLLLLPRGVPLRPLGWPLLLVLA
FPPRERLAEGVADVWQLDVGQGLAILIRTRHHTLLYDSGPRFGDFDLGERVVLPALHKLGIERLDLMLLSHADADHAGGA
LAVAKGLPVRRVISGDPPGLPEALNAEACESGQQWQWDGVGFRLWQWADAHDSNQRSCVLQIEANGERLLLTGDIDSAAE
RDLLNSALAVQTQWLQAPHHGSRSSSSMALLKALQPQAVLISRGQGNSFGHPHPTVIARYRKQGMHIHDSAEQGAIHLQL
GRFQPARSMRQQRRFWREPPLPGAGYR

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=487392 IHQ43_RS21405 WP_192562024.1 4827161..4829404(-) (comA) [Pseudomonas gozinkensis strain IzPS32d]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCGCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGGTTAAT
GCTGGTGTTGCCGTGGGTGGCGCTGATGATGCTGCCGTTTCGCAGCTATCCACTGGCGTTTTTGCTGTTTGGACTCGCAT
GGGCGGGATTCAGCGCGCAGCTGGCGTTGAATGATCGACTGCCTTCTCGGCTGGATGGCGAAACGCGCTGGGTGGAAGGG
CGGGTCGTGGGCTTGGCGCAGAATGCCGAGGGCGTCGTGCGCTTCGAACTGGCCGATGCCAGCTCGCGTCACGAGAAACT
GCCATCGCTGATGCGTCTGGCCTGGTATGCCGGGCCTGAGGTCAAAAGCGGCGAACGCTGGCGACTGGCGGTCAAGCTCA
AGCGCCCTGGTGGCCTGCTCAATCCGGATGCGTTCGATTACGAGGCCTGGCTGCTGGCGCAGCGCATCGGTGCCACCGGG
ACGGTGAAGGATGGCCAGCGTCTGGCGCCGGCGCAGTGGGCCTGGCGCGACAGTATTCGCCAGCGCCTGCTTGCGGTGGA
TGCCCAGGGGCGTAACGGCGCTCTGGCTGCGTTGGTGCTCGGCGATGGTTCGGGGCTCAGTCGCGAGGACTGGCAGACCT
TGCAGGACACCGGCACCGTGCACCTGCTGGTGATTTCGGGGCAGCACATCGGGCTGTTGGCGGCGCTGATGTACGCGCTG
GTCGCGGGGTTGGCCCGATTCGGATTTTGGCCCCTGCGTTGGCCCTGGCTGCCATGGGCATGTGGTCTGGCGATCGCGGC
GGCGCTGGGTTACGGCCTGCTGGCCGGATTCGACGTGCCGGTGCGGCGGGCCTGCGTGATGGTTGCGCTGGTGTTGTTGT
GGCGATTGCGTTTCCGCCATCTCGGTGCGTGGTGGCCGTTGCTGCTGGCCTTCAATGGTGTGCTGTTGATGGATCCGCTG
GCCAGTCTGCGTCCGGGGTTGTGGCTGTCATTCGCCGCGGTGGCTGTGTTGATCTTCACCTTCGGCGGCCGTCTGGGGCC
GTGGCGTTGGTGGCAGACCTGGACGCGTGCGCAGTGGCTGATCGCGATCGGATTGTGCCCGGTGTTGGTAACGCTGAGCC
TGCCGATCAGTCTCAGTGGGCCGCTGGCCAATCTGCTCGCGGTGCCGTGGATCAGTTTTGCGGTGTTGCCGCCGGCGTTG
TTGGGCACTTTATTGCTGCCAATCCCTTATGTCGGTGAAGGGCTGCTGTGGTTGGCCGGTGGACTGATTGAGGGATTGTT
CAGGGCACTGGCCTTGATTGCCGGGCGTTGGCCAGCGTGGGTGCCGACGACGATGGAGTGGTGGGGCTGGGCGCTGGGAG
GTCTTGGTGCCTTGTTGTTATTGCTGCCCCGAGGCGTTCCCTTGCGTCCATTGGGCTGGCCATTGCTGCTGGTGCTGGCA
TTTCCGCCCCGGGAACGCCTGGCCGAAGGCGTGGCCGATGTCTGGCAACTGGATGTCGGCCAGGGCCTGGCGATTCTGAT
CCGCACCCGACATCACACCTTGCTGTACGACAGCGGCCCGCGTTTCGGCGACTTCGACCTCGGCGAGCGAGTGGTGCTGC
CAGCCTTGCATAAACTGGGCATCGAACGGCTCGATCTGATGCTGCTCAGCCATGCCGATGCCGATCACGCGGGTGGCGCA
CTCGCCGTGGCGAAGGGATTGCCGGTCCGCCGGGTCATCAGCGGCGATCCGCCTGGGCTGCCCGAAGCGCTGAACGCCGA
AGCCTGTGAAAGCGGCCAGCAATGGCAGTGGGACGGCGTGGGCTTTCGTCTATGGCAGTGGGCCGACGCCCATGACAGCA
ACCAGCGCTCCTGCGTCCTGCAAATCGAAGCCAACGGTGAACGGTTGCTGCTGACCGGCGATATCGACAGCGCCGCCGAA
CGGGATCTGCTCAACAGCGCGCTGGCAGTTCAAACCCAGTGGCTGCAAGCGCCGCACCATGGCAGCCGCAGTTCCTCATC
GATGGCCTTGCTCAAGGCTTTGCAGCCACAGGCCGTGCTGATTTCCCGAGGGCAGGGCAATTCATTCGGTCACCCGCACC
CGACGGTCATCGCCCGTTATCGCAAGCAGGGAATGCACATCCATGACAGCGCCGAGCAGGGTGCCATTCATCTGCAACTG
GGGCGGTTTCAGCCGGCCCGGTCGATGCGTCAACAACGCCGGTTCTGGCGGGAACCGCCGTTGCCGGGGGCGGGGTACCG
TTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(37-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.004

96.252

0.606