Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IHQ43_RS21400 Genome accession   NZ_CP062253
Coordinates   4826447..4827082 (-) Length   211 a.a.
NCBI ID   WP_162803842.1    Uniprot ID   -
Organism   Pseudomonas gozinkensis strain IzPS32d     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4821447..4832082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHQ43_RS21365 - 4821844..4822314 (-) 471 WP_039770687.1 (2Fe-2S)-binding protein -
  IHQ43_RS21370 murB 4822561..4823580 (-) 1020 WP_192562021.1 UDP-N-acetylmuramate dehydrogenase -
  IHQ43_RS21375 - 4823577..4824041 (-) 465 WP_064598568.1 low molecular weight protein-tyrosine-phosphatase -
  IHQ43_RS21380 kdsB 4824041..4824805 (-) 765 WP_192562022.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IHQ43_RS21385 - 4824802..4824987 (-) 186 WP_003174668.1 Trm112 family protein -
  IHQ43_RS21390 lpxK 4825012..4826022 (-) 1011 WP_192562023.1 tetraacyldisaccharide 4'-kinase -
  IHQ43_RS21395 - 4826022..4826450 (-) 429 WP_085745066.1 biopolymer transporter ExbD -
  IHQ43_RS21400 exbB 4826447..4827082 (-) 636 WP_162803842.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IHQ43_RS21405 comA 4827161..4829404 (-) 2244 WP_192562024.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IHQ43_RS21410 - 4829541..4830059 (+) 519 WP_192562025.1 DUF2062 domain-containing protein -
  IHQ43_RS21415 - 4830114..4830893 (-) 780 WP_192562026.1 ABC transporter permease -
  IHQ43_RS21420 - 4830890..4831822 (-) 933 WP_192562027.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22842.96 Da        Isoelectric Point: 7.3615

>NTDB_id=487391 IHQ43_RS21400 WP_162803842.1 4826447..4827082(-) (exbB) [Pseudomonas gozinkensis strain IzPS32d]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=487391 IHQ43_RS21400 WP_162803842.1 4826447..4827082(-) (exbB) [Pseudomonas gozinkensis strain IzPS32d]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCTGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAGGCCGCCGCCCGGGTGATCCACGAGCTTGAACGCTACGT
CAACGCGCTGGGCACCATCGCTGCCATGTCGCCGCTGCTCGGTCTTTTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCACCGGTTCCGGCATGACCACCAACGCTTCGGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATCACCACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848