Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   IF199_RS22145 Genome accession   NZ_CP062252
Coordinates   4854501..4856744 (-) Length   747 a.a.
NCBI ID   WP_192558713.1    Uniprot ID   -
Organism   Pseudomonas allokribbensis strain IzPS23     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4849501..4861744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF199_RS22110 murB 4849901..4850920 (-) 1020 WP_192558710.1 UDP-N-acetylmuramate dehydrogenase -
  IF199_RS22115 - 4850917..4851381 (-) 465 WP_102622528.1 low molecular weight protein-tyrosine-phosphatase -
  IF199_RS22120 kdsB 4851381..4852145 (-) 765 WP_192558711.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IF199_RS22125 - 4852142..4852327 (-) 186 WP_003174668.1 Trm112 family protein -
  IF199_RS22130 lpxK 4852352..4853362 (-) 1011 WP_192558712.1 tetraacyldisaccharide 4'-kinase -
  IF199_RS22135 - 4853362..4853790 (-) 429 WP_007950767.1 biopolymer transporter ExbD -
  IF199_RS22140 exbB 4853787..4854422 (-) 636 WP_162803506.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IF199_RS22145 comA 4854501..4856744 (-) 2244 WP_192558713.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF199_RS22150 - 4856899..4857417 (+) 519 WP_192558714.1 DUF2062 domain-containing protein -
  IF199_RS22155 - 4857473..4858252 (-) 780 WP_096820942.1 ABC transporter permease -
  IF199_RS22160 - 4858249..4859181 (-) 933 WP_192558715.1 ABC transporter ATP-binding protein -
  IF199_RS22165 - 4859314..4859937 (-) 624 WP_192558716.1 glutathione S-transferase -
  IF199_RS22170 - 4859981..4860640 (-) 660 WP_192558717.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 81962.04 Da        Isoelectric Point: 9.7788

>NTDB_id=487363 IF199_RS22145 WP_192558713.1 4854501..4856744(-) (comA) [Pseudomonas allokribbensis strain IzPS23]
MRTGMMALAVGLLVPVFLPALPPVGWMVLLPVVALMLLPFRSYPLAFLLFGFAWSCIGAQWALDDRLPSKLDGETRWVEG
QVVGLPQNGDGVVRFELADARSRHEKLPSLMRLAWYDGPSVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKDGSRLAAAHWAWRDGIRRRLLEVDTQGRGAALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYGL
VAGLARFGVWPLRWPWLPWACGLAFAAALGYGLLAGFEVPVRRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLMDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPVLLTLGLPISLSGPLANLLAVPWISFAVLPPAL
LGTLLLPIPYVGEGLLWLAGGLVDGLFRTLAQIAGRWPAWVAASMPGWVLALGCIGALLLLLPRGVPLRPLGWLLLLVLA
LPPRERLAEGLADVWQLDVGQGLAILIRTRHHTLLYDSGPRFGDFDVGERVVLPALYKLGVERLDLMLLSHADADHAGGA
LAVANGLPVSRVLSGDPPGLPEALNAETCESGRQWQWDGVAFHLWQWADAHDSNQRSCVLQIEANGERLLLTGDIDTAAE
RDLLNSALAVPTRWLQAPHHGSRSSSSMALLKVLQPRDVLISRGQGNSFGHPYPTVIARYRKLGLRIHDSAEQGAIHLQL
GRFQPARSMRQQRRFWRDPPLPGAEYR

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=487363 IF199_RS22145 WP_192558713.1 4854501..4856744(-) (comA) [Pseudomonas allokribbensis strain IzPS23]
ATGCGCACAGGGATGATGGCGCTGGCGGTCGGTCTGCTGGTTCCGGTTTTTTTGCCGGCGTTGCCGCCGGTCGGGTGGAT
GGTTTTGCTGCCGGTCGTGGCGCTGATGCTGCTGCCGTTTCGCAGTTACCCGCTGGCCTTTTTGCTGTTCGGCTTCGCCT
GGTCGTGCATCGGTGCGCAGTGGGCGCTGGATGATCGATTGCCATCGAAGCTGGACGGTGAGACGCGCTGGGTCGAAGGG
CAGGTGGTCGGTCTGCCGCAAAATGGCGACGGCGTTGTGCGCTTCGAACTGGCCGATGCCCGTTCGCGGCACGAGAAACT
GCCGTCGCTGATGCGTCTGGCGTGGTACGACGGGCCATCGGTCAACAGCGGTGAGCGCTGGCGCCTGGCGGTCAAGCTCA
AGCGTCCCGGCGGGCTGCTCAATCCCGATGCCTTCGATTACGAGGCCTGGCTGTTGGCGCAACGCATCGGCGCCACCGGC
ACGGTAAAGGACGGCAGTCGGCTGGCGGCAGCGCATTGGGCCTGGCGGGACGGCATTCGTCGGCGTCTGCTGGAAGTGGA
CACCCAGGGGCGAGGCGCCGCGCTGGCGGCGTTGGTGCTGGGTGATGGCTCGGGACTCAGTCGCGAGGACTGGCAGATTC
TGCAGGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGGCAGCACATCGGTCTGTTGGCGGCGGTGATGTATGGGCTG
GTCGCCGGGCTGGCGCGATTCGGTGTGTGGCCATTGCGTTGGCCATGGCTGCCGTGGGCGTGCGGTCTGGCGTTCGCGGC
GGCGCTGGGTTACGGGCTGCTGGCCGGGTTCGAGGTGCCGGTGCGACGGGCCTGCGTGATGGTTGCGCTGGTGTTGCTGT
GGCGATTGCGATTTCGCCATCTCGGTGCCTGGTGGCCGTTGTTGCTGGCCTTCAATGGGGTGTTGTTGATGGACCCGCTG
GCCAGTCTGCGTCCGGGATTGTGGTTGTCCTTCGCGGCGGTGGCGGTGCTGATTTTCACCTTCGGCGGTCGACTGGGACC
CTGGCGCTGGTGGCAGACCTGGACGCGAGCGCAATGGCTGATCGCTATCGGCCTGTGCCCGGTGTTGCTGACCTTGGGCT
TGCCGATCAGCCTCAGCGGGCCATTGGCCAATCTGCTGGCGGTGCCGTGGATCAGCTTTGCGGTGCTGCCGCCGGCATTG
CTGGGCACTTTGTTGTTGCCGATTCCCTATGTCGGCGAAGGTCTGTTGTGGCTGGCCGGCGGGCTGGTCGATGGATTGTT
CCGGACTCTGGCCCAGATCGCAGGGCGTTGGCCAGCGTGGGTTGCAGCATCGATGCCGGGTTGGGTTCTGGCACTGGGCT
GCATCGGTGCACTGCTGTTATTGCTGCCCCGAGGCGTTCCGTTGCGCCCCTTGGGTTGGCTGTTACTGCTGGTGCTGGCA
TTACCGCCCCGGGAGCGGCTGGCCGAAGGCCTGGCGGATGTCTGGCAGCTCGACGTCGGCCAGGGTCTGGCGATTCTGAT
ACGCACCCGTCACCACACATTACTGTACGACAGCGGCCCGCGTTTCGGCGACTTTGACGTCGGTGAACGGGTGGTGCTGC
CTGCCTTGTACAAGCTGGGCGTGGAGCGGCTCGACCTGATGCTGCTCAGCCATGCCGACGCTGACCATGCCGGTGGCGCG
TTGGCGGTGGCAAACGGCTTGCCGGTCAGCCGGGTGCTCAGTGGCGATCCGCCGGGTCTGCCCGAAGCGCTGAACGCTGA
AACCTGTGAAAGCGGTCGGCAATGGCAATGGGACGGCGTTGCCTTTCATCTATGGCAGTGGGCCGACGCCCATGACAGCA
ACCAGCGTTCCTGCGTCCTGCAGATCGAAGCCAACGGCGAGCGGTTGCTGCTGACCGGCGATATCGACACCGCTGCCGAA
CGGGATTTGCTCAACAGCGCACTGGCGGTTCCGACCCGATGGCTGCAAGCCCCGCACCATGGCAGTCGCAGTTCTTCCTC
GATGGCGTTGCTCAAGGTTTTGCAGCCTCGGGACGTGCTGATCTCCCGGGGGCAGGGCAACTCGTTCGGGCATCCGTATC
CGACGGTCATCGCTCGTTACCGCAAGCTGGGCTTGCGCATCCATGACAGCGCCGAGCAGGGTGCCATTCATCTGCAACTG
GGCAGATTCCAGCCGGCCCGGTCGATGCGTCAGCAGCGCCGGTTCTGGCGCGACCCGCCGCTGCCGGGGGCGGAGTACCG
TTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.865

96.252

0.605
  comA Ralstonia pseudosolanacearum GMI1000

33.831

100

0.364