Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KD154_RS09670 Genome accession   NZ_CP073589
Coordinates   1981321..1982058 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain MFDS1006657     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1976321..1987058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KD154_RS09655 clpC 1976775..1979348 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  KD154_RS09660 yfiH 1979478..1980209 (-) 732 WP_047091760.1 purine nucleoside phosphorylase YfiH -
  KD154_RS09665 rluD 1980206..1981186 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KD154_RS09670 comL 1981321..1982058 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KD154_RS09675 raiA 1982329..1982670 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KD154_RS09680 pheL 1982774..1982821 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KD154_RS09685 pheA 1982920..1984080 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  KD154_RS09690 tyrA 1984123..1985244 (-) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KD154_RS09695 aroF 1985255..1986325 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KD154_RS09700 yfiL 1986535..1986900 (+) 366 WP_212039492.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=487337 KD154_RS09670 WP_000197686.1 1981321..1982058(+) (comL) [Escherichia coli strain MFDS1006657]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=487337 KD154_RS09670 WP_000197686.1 1981321..1982058(+) (comL) [Escherichia coli strain MFDS1006657]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376