Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KDN44_RS05960 Genome accession   NZ_CP073360
Coordinates   1218785..1219522 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EC11     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1213785..1224522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDN44_RS05930 yfiL 1213943..1214308 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  KDN44_RS05935 aroF 1214518..1215588 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KDN44_RS05940 tyrA 1215599..1216720 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KDN44_RS05945 pheA 1216763..1217923 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  KDN44_RS05950 pheL 1218022..1218069 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KDN44_RS05955 raiA 1218173..1218514 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KDN44_RS05960 comL 1218785..1219522 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KDN44_RS05965 rluD 1219657..1220637 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KDN44_RS05970 yfiH 1220634..1221365 (+) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  KDN44_RS05975 clpC 1221495..1224068 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=487257 KDN44_RS05960 WP_000197686.1 1218785..1219522(-) (comL) [Escherichia coli strain EC11]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=487257 KDN44_RS05960 WP_000197686.1 1218785..1219522(-) (comL) [Escherichia coli strain EC11]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376