Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   KDH82_RS00410 Genome accession   NZ_CP073350
Coordinates   99512..101311 (-) Length   599 a.a.
NCBI ID   WP_179102492.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain LyG-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 94512..106311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KDH82_RS00375 (KDH82_00375) lepB 95214..95840 (+) 627 WP_211599988.1 signal peptidase I -
  KDH82_RS00380 (KDH82_00380) - 95861..96499 (+) 639 WP_211600341.1 WbqC family protein -
  KDH82_RS00385 (KDH82_00385) - 96557..97531 (+) 975 WP_058019352.1 polyprenyl synthetase family protein -
  KDH82_RS00390 (KDH82_00390) - 97640..97801 (-) 162 WP_198404205.1 hypothetical protein -
  KDH82_RS00395 (KDH82_00395) deoC 97842..98711 (-) 870 WP_088528892.1 deoxyribose-phosphate aldolase -
  KDH82_RS00400 (KDH82_00400) - 98698..99048 (-) 351 WP_012458625.1 nucleotide pyrophosphohydrolase -
  KDH82_RS00405 (KDH82_00405) dtd 99053..99505 (-) 453 WP_054191489.1 D-aminoacyl-tRNA deacylase -
  KDH82_RS00410 (KDH82_00410) uvrC 99512..101311 (-) 1800 WP_179102492.1 excinuclease ABC subunit UvrC Machinery gene
  KDH82_RS00415 (KDH82_00415) mnmG 101345..103222 (-) 1878 WP_211599990.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  KDH82_RS00425 (KDH82_00425) - 103495..103653 (+) 159 WP_249134680.1 DUF1661 domain-containing protein -
  KDH82_RS00430 (KDH82_00430) - 104100..104690 (+) 591 WP_043894301.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69698.32 Da        Isoelectric Point: 9.6181

>NTDB_id=487202 KDH82_RS00410 WP_179102492.1 99512..101311(-) (uvrC) [Porphyromonas gingivalis strain LyG-2]
MTPDELNIILPTLPEKPGCYQYFDEDGKVIYVGKAKNLRRRVSSYFYKEHADRKTRILVRQIRSIKYIVVDSEGDALLLE
NSLIKEYQPRYNVLLKDGKTYPSIVIKREPFPRIFATRDIKKDGSEYFGPYPGALIAKGMLRLVKEIYPIRTCKLDLREE
KIRQGRYRVCLQYHIKKCKGPCIGNQTSNEYESNVSEIRDLLRGNLHRLVRMYRDRMQVYSEGLRFEEAQTCKERIELLE
RYEAKHTVVPRNIDNVDVFSYDEDEHTAYINYMHIEHGGINRVYTLEYRKQIEESKEELLAAAITELRQRFESNAHEIVL
PFDTGWQTGESITTTIPRRGDKRKLLELSEKNVAQYKLDKLKRAEKLNPEQRALHIVHGIQKDLHLDRPPKHIECFDNSN
IQGTSPVAACVVFKMGKPSKKDYRKFHVKTVEGPNDFASMREIISRHYSHLTEENLPLPDLIVVDGGKGQLSAAYETLDK
LGLIGKIPIIGLAERLEEIFFPKDPVPLILDKKSETLKVIQHLRDEAHRFGIGFHRDVRSKKQIQSELDNIKGIGKKTKE
DLLRHFKSVKRIRSAEEEELSALIGRNKAKLLYEGLRKK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=487202 KDH82_RS00410 WP_179102492.1 99512..101311(-) (uvrC) [Porphyromonas gingivalis strain LyG-2]
ATGACCCCCGACGAACTGAACATCATCCTCCCTACCCTGCCGGAAAAACCGGGTTGCTACCAGTACTTCGATGAAGATGG
GAAGGTAATCTATGTAGGCAAGGCCAAAAACCTTCGGCGCAGGGTCAGTTCGTATTTTTACAAGGAGCACGCAGACAGGA
AAACTCGCATACTGGTCAGACAGATCAGGAGTATCAAATACATAGTTGTGGACAGCGAAGGGGATGCCCTGCTGCTCGAA
AACTCACTGATCAAAGAGTATCAACCTCGGTATAATGTCCTCCTCAAAGATGGGAAGACATACCCCAGCATAGTGATCAA
ACGGGAACCTTTCCCACGTATATTCGCCACACGGGACATCAAAAAGGACGGATCCGAATACTTCGGCCCCTATCCGGGCG
CACTCATTGCCAAAGGGATGCTCCGCCTTGTGAAAGAGATCTATCCGATCCGTACCTGCAAACTGGATCTGAGAGAGGAG
AAAATCCGACAAGGACGGTACCGCGTCTGCCTGCAGTATCACATCAAGAAATGCAAAGGCCCCTGCATCGGCAATCAAAC
TTCGAACGAGTACGAAAGCAATGTATCGGAAATACGCGATCTGCTCCGAGGCAACTTGCACAGGCTTGTACGCATGTATC
GCGACAGGATGCAGGTATACAGCGAAGGACTGCGCTTCGAAGAGGCACAGACATGCAAGGAGAGAATAGAGCTTCTTGAG
CGATACGAAGCCAAGCATACTGTCGTACCGCGTAATATAGACAACGTAGATGTTTTCTCTTACGACGAAGACGAGCACAC
GGCCTATATCAACTACATGCACATAGAGCACGGAGGGATCAATCGTGTGTACACCTTGGAGTACAGAAAGCAGATAGAGG
AATCGAAAGAAGAACTTCTTGCTGCGGCGATAACAGAGCTGAGACAAAGATTCGAAAGCAACGCTCACGAAATCGTTTTG
CCGTTCGATACCGGTTGGCAAACGGGAGAGAGCATCACGACTACGATCCCCCGACGTGGAGACAAACGGAAACTGCTGGA
ATTATCCGAGAAGAACGTAGCTCAATACAAGCTCGACAAACTCAAACGTGCCGAGAAGCTCAATCCCGAGCAACGCGCCC
TACATATCGTCCACGGAATCCAAAAGGATTTGCACTTGGATCGCCCGCCGAAACATATCGAATGCTTCGACAACTCGAAT
ATACAGGGTACGAGTCCGGTGGCAGCCTGCGTTGTTTTCAAAATGGGGAAACCGAGCAAAAAGGATTACCGAAAGTTTCA
CGTGAAAACAGTCGAAGGGCCGAACGACTTCGCCTCCATGAGAGAAATCATCAGTCGGCATTACTCCCACCTGACGGAAG
AGAACTTACCCCTACCCGACCTGATCGTCGTAGATGGAGGGAAAGGACAGCTTAGCGCAGCGTACGAAACATTAGATAAA
CTGGGGCTCATCGGCAAGATACCCATCATAGGATTGGCCGAACGTCTGGAGGAAATCTTTTTCCCGAAGGACCCCGTTCC
GCTGATTTTGGACAAGAAAAGCGAAACGCTCAAGGTCATACAACACCTACGCGACGAAGCACACCGCTTCGGGATCGGGT
TCCACCGCGATGTACGAAGTAAGAAACAAATTCAGAGCGAACTGGACAATATCAAAGGCATCGGTAAGAAAACAAAAGAA
GATCTGCTCCGCCATTTCAAAAGCGTAAAGCGAATACGCTCCGCAGAAGAGGAAGAGCTTAGTGCTCTTATCGGCCGGAA
CAAAGCGAAACTATTATACGAAGGACTCAGAAAGAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(381-532)

GIY-YIG catalytic domain (GIY-YIG)

(17-92)

Helix-hairpin-helix domain (HHH_5)

(547-598)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

38.54

98.331

0.379
  uvrC Streptococcus pneumoniae D39

38.54

98.331

0.379
  uvrC Streptococcus pneumoniae TIGR4

38.2

98.331

0.376