Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   KCI35_RS09030 Genome accession   NZ_CP073348
Coordinates   2117087..2118886 (+) Length   599 a.a.
NCBI ID   WP_211605386.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain GMU202011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2112087..2123886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCI35_RS09005 - 2112607..2112843 (-) 237 WP_211604771.1 DUF3149 domain-containing protein -
  KCI35_RS09010 - 2112851..2114434 (-) 1584 WP_211604772.1 hypothetical protein -
  KCI35_RS09015 - 2114767..2114937 (-) 171 WP_249158431.1 hypothetical protein -
  KCI35_RS10465 - 2114919..2114976 (+) 58 Protein_1764 hypothetical protein -
  KCI35_RS09025 mnmG 2115176..2117053 (+) 1878 WP_211604774.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -
  KCI35_RS09030 uvrC 2117087..2118886 (+) 1800 WP_211605386.1 excinuclease ABC subunit UvrC Machinery gene
  KCI35_RS09035 dtd 2118893..2119345 (+) 453 WP_211604775.1 D-aminoacyl-tRNA deacylase -
  KCI35_RS09040 - 2119350..2119700 (+) 351 WP_012458625.1 nucleotide pyrophosphohydrolase -
  KCI35_RS09045 deoC 2119687..2120556 (+) 870 WP_211604776.1 deoxyribose-phosphate aldolase -
  KCI35_RS09050 - 2120597..2120758 (+) 162 WP_013815280.1 hypothetical protein -
  KCI35_RS09055 - 2120867..2121841 (-) 975 WP_005874924.1 polyprenyl synthetase family protein -
  KCI35_RS09060 - 2121899..2122537 (-) 639 WP_012458629.1 WbqC family protein -
  KCI35_RS09065 lepB 2122558..2123184 (-) 627 WP_012458630.1 signal peptidase I -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69734.36 Da        Isoelectric Point: 9.7071

>NTDB_id=487165 KCI35_RS09030 WP_211605386.1 2117087..2118886(+) (uvrC) [Porphyromonas gingivalis strain GMU202011]
MTRDELNIILPTLPEKPGCYQYFDEDGKVIYVGKAKNLRRRVSSYFYKEHADRKTRILVRQIRSIKYIVVDSEGDALLLE
NSLIKEYQPRYNVLLKDGKTYPSIVIKREPFPRIFATRDIKKDGSEYFGPYPGALIAKGMLRLVKEIYPIRTCKLDLREE
KIRQGRYRVCLQYHIKKCKGPCIGNQTSNEYESNVSEIRDLLRGNLHRLVRMYRDRMQGYSEGLRFEEAQTCKERIELLE
RYEAKHTVVPRNIDNVDVFSYDEDEHTAYINYMHIEHGGINRVYTLEYRKQIEESKEELLAAAITELRQRFESNAHEIVL
PFDTGWQTGESITTTIPRRGDKRKLLELSEKNVAQYKLDKLKRAEKLNPEQRALHIVHGIQKDLHLDRPPKHIECFDNSN
IQGTSPVAACVVFKMGKPSKKDYRKFHVKTVEGPNDFASMREIISRHYSRLTEENLPLPDLIVVDGGKGQLSAAYETLDK
LGLIGKIPIIGLAERLEEIFFPKDPVPLILDKKSETLKVIQHLRDEAHRFGIGFHRDVRSKKQIQSELDNIKGIGKKTKE
DLLRHFKSVKRIRSAEEEELSALIGRNKAKLLYEGLRKK

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=487165 KCI35_RS09030 WP_211605386.1 2117087..2118886(+) (uvrC) [Porphyromonas gingivalis strain GMU202011]
ATGACCCGCGACGAACTGAACATCATCCTCCCTACCCTGCCGGAAAAACCGGGTTGCTACCAGTACTTCGATGAAGATGG
GAAGGTAATCTATGTAGGCAAGGCCAAAAACCTTCGGCGCAGGGTCAGTTCGTATTTTTACAAGGAGCACGCAGACAGGA
AGACCCGCATACTGGTCAGACAGATCAGGAGTATCAAATACATCGTTGTGGACAGCGAAGGGGATGCCCTGCTGCTCGAA
AACTCACTGATCAAAGAGTATCAACCTCGGTATAATGTCCTCCTCAAAGATGGGAAAACATACCCCAGCATAGTGATCAA
ACGGGAACCTTTCCCACGTATATTCGCCACACGGGACATCAAAAAGGACGGATCCGAATACTTCGGCCCCTATCCGGGCG
CACTCATTGCCAAAGGGATGCTCCGCCTTGTGAAAGAGATCTACCCGATCCGCACCTGCAAACTGGATCTGAGAGAGGAG
AAAATCCGACAAGGACGGTACCGCGTCTGCCTGCAGTATCACATCAAGAAATGCAAAGGCCCCTGCATCGGCAATCAAAC
TTCAAACGAGTACGAAAGCAATGTATCGGAAATACGCGATCTGCTCCGAGGCAACTTGCACAGGCTTGTACGCATGTATC
GCGACAGGATGCAGGGATACAGCGAAGGACTGCGCTTCGAAGAGGCACAGACATGCAAGGAGAGAATAGAGCTTCTTGAG
CGATACGAAGCCAAGCATACGGTCGTACCGCGTAATATAGACAACGTAGATGTTTTCTCTTACGACGAAGACGAGCACAC
GGCCTATATCAACTACATGCACATAGAGCACGGAGGGATCAATCGTGTGTACACCTTGGAGTACAGAAAGCAGATAGAGG
AATCGAAAGAAGAACTTCTTGCAGCGGCGATAACAGAGCTGAGACAAAGATTCGAAAGCAACGCTCACGAAATCGTTTTG
CCGTTCGACACCGGTTGGCAAACGGGAGAGAGCATCACGACTACGATCCCCCGACGTGGAGACAAACGGAAACTGCTGGA
ATTATCCGAGAAGAACGTAGCTCAATACAAGCTCGACAAACTCAAACGTGCCGAGAAGCTCAATCCCGAGCAACGCGCCC
TACATATCGTCCACGGGATCCAAAAGGATTTGCACTTGGATCGTCCGCCGAAACATATCGAATGCTTCGACAACTCCAAT
ATACAGGGTACGAGTCCGGTGGCAGCCTGCGTTGTTTTCAAAATGGGGAAACCGAGCAAAAAGGATTACCGAAAGTTTCA
CGTGAAAACAGTCGAAGGGCCGAACGACTTCGCCTCCATGAGAGAAATCATCAGTCGGCATTACTCCCGCCTGACGGAAG
AGAACCTACCCCTACCCGACCTGATCGTCGTAGATGGAGGGAAAGGACAGCTTAGCGCAGCGTACGAAACATTAGATAAA
CTGGGGCTCATCGGCAAGATACCCATCATAGGATTGGCCGAACGTCTGGAGGAAATCTTTTTCCCGAAGGATCCCGTTCC
GCTGATTTTGGACAAGAAAAGCGAAACGCTCAAGGTCATACAACACCTACGCGACGAAGCACACCGCTTCGGGATCGGGT
TCCACCGCGATGTACGAAGTAAGAAACAAATTCAGAGCGAACTGGACAATATCAAAGGCATCGGTAAGAAAACAAAAGAA
GATCTGCTCCGCCATTTCAAAAGCGTAAAGCGAATACGCTCCGCAGAAGAGGAAGAGCTTAGTGCTCTTATCGGCCGGAA
CAAAGCGAAACTATTATACGAAGGACTCAGAAAGAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(381-532)

Helix-hairpin-helix domain (HHH_5)

(547-598)

GIY-YIG catalytic domain (GIY-YIG)

(17-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

38.54

98.331

0.379
  uvrC Streptococcus pneumoniae D39

38.54

98.331

0.379
  uvrC Streptococcus pneumoniae TIGR4

38.2

98.331

0.376