Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   D1J36_RS02445 Genome accession   NZ_CP073239
Coordinates   519920..521710 (+) Length   596 a.a.
NCBI ID   WP_252339415.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0416     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 514920..526710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J36_RS02415 (D1J36_002410) - 515105..515617 (+) 513 WP_154138219.1 NUDIX domain-containing protein -
  D1J36_RS02420 (D1J36_002415) - 515696..516202 (+) 507 WP_079207465.1 ferritin -
  D1J36_RS02425 (D1J36_002420) ruvB 516366..517388 (+) 1023 WP_154138220.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  D1J36_RS02430 (D1J36_002425) - 517425..518291 (+) 867 WP_154138221.1 MBL fold metallo-hydrolase -
  D1J36_RS02435 (D1J36_002430) coaE 518307..518897 (+) 591 WP_154138222.1 dephospho-CoA kinase -
  D1J36_RS02440 (D1J36_002435) - 518911..519900 (+) 990 WP_154138223.1 cation diffusion facilitator family transporter -
  D1J36_RS02445 (D1J36_002440) uvrC 519920..521710 (+) 1791 WP_252339415.1 excinuclease ABC subunit UvrC Machinery gene
  D1J36_RS02450 (D1J36_002445) - 521795..522688 (+) 894 WP_154138225.1 hypothetical protein -
  D1J36_RS02455 (D1J36_002450) - 522840..524228 (+) 1389 WP_154138226.1 DUF4932 domain-containing protein -
  D1J36_RS02460 (D1J36_002455) - 524366..525991 (+) 1626 WP_154138227.1 leucine-rich repeat domain-containing protein -
  D1J36_RS02465 (D1J36_002460) - 525981..526334 (-) 354 WP_252339416.1 VanZ family protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 69075.89 Da        Isoelectric Point: 9.1320

>NTDB_id=487105 D1J36_RS02445 WP_252339415.1 519920..521710(+) (uvrC) [Riemerella anatipestifer strain RCAD0416]
MNETLELQLKTLPKEPGVYRYYDEAGQLLYVGKAKNLKNRVLSYFNKSQVGYKTKIMVKKIHRLEITIVPSEYDALLLEN
NLIKEHQPFYNIMMKDDKSFPWLCIKNEPFPRLFLTRKRIKDGSEYYGPYAKVKPAKVLLETIKNLYKIRTCTLNLSEDR
IEKANYKVCLEYHIKNCEGPCEGLESEEDYEKKINAVRGIIKGDFRLAKAYLEEEMLKHASNLEFEKAQMVKEKLAFLED
YQVKHTVVNPSIDDVDVFGMVSDETAAYINYFKIRNGNIVQSYTSEFRKKLEESDEEILEEAVVAIRDKFLSESKEILLP
FHLGTEIPQVKLIVPKVGDKKRIVELSEKNAREYRLEKLKQIQIVDPDRHTNRIMSEMKTLLRLPEEPRHIEGFDNSNIQ
GTNPVSACVVFKDGKPSKKDYRIFHIKTVEGPNDFASMEEVIYRRYKRYLDEGESLPQLILIDGGKGQLSSAVKSLKKLD
LYGKISIIGIAKRLEELFFPNDPIPLYLDKTSETLKVLQRVRDEAHRFGVKHHRTRRTNSTIKSELEEIPGVGAKSIELL
LSKLKSVKRIKEASQETLEEILGKSKGSIVWQYFNG

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=487105 D1J36_RS02445 WP_252339415.1 519920..521710(+) (uvrC) [Riemerella anatipestifer strain RCAD0416]
GTGAATGAAACTTTAGAACTTCAGCTAAAAACTTTACCAAAAGAACCTGGCGTTTACCGTTATTATGACGAAGCGGGGCA
ACTGCTCTATGTAGGGAAAGCCAAAAACCTTAAAAATAGGGTGTTATCTTACTTCAATAAAAGTCAAGTAGGTTATAAGA
CCAAAATTATGGTTAAAAAAATCCACCGCTTGGAAATTACCATAGTTCCTAGTGAATACGACGCCCTCCTTTTAGAAAAC
AACCTCATCAAGGAACATCAGCCTTTCTACAATATTATGATGAAAGACGACAAAAGTTTCCCTTGGTTGTGCATCAAAAA
TGAACCTTTCCCTAGACTATTTCTTACCAGAAAACGCATTAAAGATGGCTCCGAATATTATGGTCCTTACGCTAAAGTAA
AACCTGCCAAGGTACTTTTAGAAACCATTAAAAATCTCTATAAAATCAGGACTTGTACGCTTAATCTTTCTGAAGATAGA
ATAGAGAAAGCCAATTATAAAGTCTGTCTAGAATACCACATTAAGAACTGCGAAGGTCCTTGTGAAGGTTTGGAAAGCGA
GGAAGATTACGAAAAGAAAATCAATGCTGTAAGAGGAATTATAAAAGGAGATTTCCGTTTGGCAAAAGCCTACTTAGAAG
AGGAGATGCTAAAACACGCCTCCAATCTAGAGTTTGAAAAAGCTCAAATGGTAAAGGAAAAGTTGGCGTTTTTGGAAGAT
TATCAGGTTAAACATACCGTGGTTAATCCTAGTATAGACGATGTAGATGTCTTTGGTATGGTAAGCGATGAAACGGCAGC
TTACATCAATTATTTTAAAATCAGAAATGGAAATATCGTTCAAAGTTATACTTCCGAATTCAGAAAAAAACTAGAAGAAA
GCGACGAAGAAATACTAGAAGAAGCTGTAGTTGCAATTAGAGATAAATTTCTGTCTGAATCTAAGGAAATATTACTACCA
TTCCATTTAGGCACCGAAATTCCTCAAGTGAAACTCATCGTTCCAAAAGTGGGCGACAAAAAGAGAATTGTAGAACTCTC
CGAAAAAAATGCGAGAGAATATCGTCTAGAAAAACTAAAGCAAATCCAAATTGTAGACCCTGACCGCCATACCAATCGTA
TTATGTCAGAAATGAAAACACTTCTTAGGCTTCCAGAGGAGCCAAGACACATTGAGGGGTTTGACAATTCTAATATCCAA
GGGACTAACCCAGTATCTGCCTGTGTTGTCTTTAAAGACGGCAAACCAAGCAAGAAGGATTATCGTATTTTCCATATCAA
AACCGTAGAAGGTCCTAACGACTTCGCTTCTATGGAAGAAGTGATTTACCGAAGATATAAAAGATATTTGGATGAGGGTG
AGTCTCTACCTCAACTGATTTTGATAGACGGCGGTAAGGGGCAGCTAAGCTCTGCCGTTAAAAGTTTAAAAAAGTTAGAT
TTATATGGTAAAATCTCCATCATAGGTATTGCCAAAAGGTTGGAAGAGCTATTTTTCCCTAACGACCCTATTCCTTTATA
TTTAGACAAAACTTCGGAAACACTTAAAGTCTTACAAAGAGTGAGAGACGAAGCCCACCGTTTCGGAGTAAAGCACCACC
GCACTAGAAGGACCAACAGCACCATAAAATCAGAATTAGAAGAAATCCCAGGCGTTGGAGCTAAATCCATAGAGCTATTG
CTAAGTAAACTAAAATCGGTAAAGCGTATTAAAGAAGCCTCACAGGAAACTTTAGAGGAAATTTTGGGCAAGTCTAAAGG
CAGTATAGTATGGCAGTATTTTAATGGATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-530)

GIY-YIG catalytic domain (GIY-YIG)

(16-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

37.458

98.993

0.371
  uvrC Streptococcus pneumoniae D39

37.458

98.993

0.371
  uvrC Streptococcus pneumoniae TIGR4

37.288

98.993

0.369