Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   KCG51_RS05415 Genome accession   NZ_CP073119
Coordinates   1114779..1115255 (-) Length   158 a.a.
NCBI ID   WP_250579630.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1109779..1120255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS05390 (KCG51_05400) - 1110148..1111284 (-) 1137 WP_250579614.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  KCG51_RS05395 (KCG51_05405) - 1111367..1111936 (-) 570 WP_250579616.1 RNA 2'-phosphotransferase -
  KCG51_RS05400 (KCG51_05410) trpE 1111980..1113455 (-) 1476 WP_250579618.1 anthranilate synthase component I -
  KCG51_RS05405 (KCG51_05415) - 1113591..1113968 (-) 378 WP_250579626.1 hypothetical protein -
  KCG51_RS05410 (KCG51_05420) - 1114106..1114726 (+) 621 WP_250579628.1 Smr/MutS family protein -
  KCG51_RS05415 (KCG51_05425) pilL 1114779..1115255 (-) 477 WP_250579630.1 PilX family type IV pilin Machinery gene
  KCG51_RS05420 (KCG51_05430) pilK 1115273..1115854 (-) 582 WP_250579632.1 pilus assembly protein Machinery gene
  KCG51_RS05425 (KCG51_05435) pilJ 1115833..1116768 (-) 936 WP_250579634.1 pilus assembly protein PilW Machinery gene
  KCG51_RS05430 (KCG51_05440) pilV/pilI 1116771..1117352 (-) 582 WP_250579636.1 type IV pilus modification protein PilV Regulator
  KCG51_RS05435 (KCG51_05445) pilH 1117458..1118171 (-) 714 WP_250579638.1 GspH/FimT family pseudopilin Machinery gene
  KCG51_RS05440 (KCG51_05450) dnaB 1118328..1119734 (-) 1407 WP_250579645.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17506.28 Da        Isoelectric Point: 9.6907

>NTDB_id=487060 KCG51_RS05415 WP_250579630.1 1114779..1115255(-) (pilL) [Neisseria subflava strain HP0069]
MNTSITKSQGFTLVEMLIVVAIIGILSTIAYPSYIHYIERGYQSQAHAELVAINSAFKNKMVKNPKLKTDEIKKFISSYK
GHKDLADKYKYSAEMIDACTSRAYCLKAIPTKTGYTLSVWMDSLGNAYKCTDIDSANNFKTAMTNGKGCESVSKKKAS

Nucleotide


Download         Length: 477 bp        

>NTDB_id=487060 KCG51_RS05415 WP_250579630.1 1114779..1115255(-) (pilL) [Neisseria subflava strain HP0069]
ATGAATACGTCTATCACTAAATCTCAAGGGTTTACGCTGGTTGAGATGCTGATTGTCGTTGCTATCATTGGCATCCTCAG
TACCATCGCTTACCCTTCCTATATCCATTACATTGAACGCGGCTACCAATCACAAGCGCATGCCGAGTTAGTCGCCATCA
ATTCTGCTTTTAAAAACAAGATGGTTAAAAATCCAAAGTTGAAAACTGATGAGATTAAAAAATTTATTTCCTCATACAAA
GGCCATAAAGATTTGGCAGACAAATACAAATACTCCGCCGAAATGATTGATGCCTGTACAAGCCGAGCCTATTGTTTGAA
AGCCATTCCCACAAAAACAGGCTATACCCTTTCCGTTTGGATGGATAGTTTGGGCAATGCTTACAAATGCACTGATATTG
ATTCAGCCAATAATTTCAAAACTGCAATGACCAATGGCAAAGGTTGCGAATCGGTTTCCAAAAAGAAAGCTTCTTAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)

Minor type IV pilin, PilX (Pilin_PilX)

(37-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

47.742

98.101

0.468
  pilX Neisseria meningitidis 8013

47.097

98.101

0.462