Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KCG51_RS00060 Genome accession   NZ_CP073119
Coordinates   6344..6508 (+) Length   54 a.a.
NCBI ID   WP_254342571.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1344..11508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS00020 - 3582..3815 (+) 234 WP_254342563.1 S-adenosylmethionine synthetase N-terminal domain-containing protein -
  KCG51_RS00025 - 3812..4096 (+) 285 WP_254342565.1 hypothetical protein -
  KCG51_RS00030 - 4142..4468 (+) 327 WP_254342566.1 methionine adenosyltransferase domain-containing protein -
  KCG51_RS00035 - 4474..4656 (+) 183 WP_254342568.1 hypothetical protein -
  KCG51_RS00040 (KCG51_00025) - 4751..5072 (+) 322 Protein_7 accessory factor UbiK family protein -
  KCG51_RS00045 comM 5076..5552 (+) 477 WP_254342569.1 magnesium chelatase domain-containing protein Machinery gene
  KCG51_RS00050 - 5879..6031 (-) 153 WP_254342570.1 hypothetical protein -
  KCG51_RS00055 - 6032..6408 (+) 377 Protein_10 ATP-binding protein -
  KCG51_RS00060 comM 6344..6508 (+) 165 WP_254342571.1 hypothetical protein Machinery gene
  KCG51_RS00065 (KCG51_00035) - 6690..6811 (+) 122 Protein_12 cell division protein FtsN -
  KCG51_RS00070 (KCG51_00040) - 6960..7421 (-) 462 WP_254342572.1 hypothetical protein -
  KCG51_RS10790 - 7844..8437 (+) 594 Protein_14 thiol:disulfide interchange protein DsbA/DsbL -
  KCG51_RS00075 (KCG51_00045) - 8482..9299 (+) 818 Protein_15 undecaprenyl-diphosphate phosphatase -
  KCG51_RS00080 (KCG51_00050) - 9369..9818 (-) 450 Protein_16 type IV pilin protein -
  KCG51_RS00090 (KCG51_00055) - 10034..10317 (-) 284 Protein_17 helix-hairpin-helix domain-containing protein -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6107.05 Da        Isoelectric Point: 10.4637

>NTDB_id=487028 KCG51_RS00060 WP_254342571.1 6344..6508(+) (comM) [Neisseria subflava strain HP0069]
MRARWQSPHPKEAQEALGTMLEKLSLSARSFHRIMRVARTLADLAGDEESAKPM

Nucleotide


Download         Length: 165 bp        

>NTDB_id=487028 KCG51_RS00060 WP_254342571.1 6344..6508(+) (comM) [Neisseria subflava strain HP0069]
GTGCGAGCTCGATGGCAAAGCCCGCATCCAAAAGAAGCGCAAGAAGCCTTGGGAACCATGCTTGAAAAACTGTCCCTTTC
CGCACGAAGTTTCCACCGCATCATGCGCGTCGCCCGTACGCTGGCCGATTTGGCAGGCGACGAAGAGTCAGCAAAACCCA
TGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

46.809

87.037

0.407
  comM Vibrio cholerae strain A1552

46.809

87.037

0.407
  comM Vibrio campbellii strain DS40M4

50

74.074

0.37