Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   KCG55_RS10465 Genome accession   NZ_CP073117
Coordinates   2197848..2198498 (+) Length   216 a.a.
NCBI ID   WP_254322996.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 2192848..2203498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS10445 (KCG55_10520) - 2193103..2194644 (-) 1542 WP_254322993.1 OFA family MFS transporter -
  KCG55_RS10450 (KCG55_10525) - 2194868..2195449 (-) 582 WP_254322994.1 superoxide dismutase -
  KCG55_RS10455 (KCG55_10530) dnaB 2195604..2197010 (+) 1407 WP_036493702.1 replicative DNA helicase -
  KCG55_RS10460 (KCG55_10535) pilH 2197167..2197832 (+) 666 WP_254322995.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KCG55_RS10465 (KCG55_10540) pilV 2197848..2198498 (+) 651 WP_254322996.1 type IV pilus modification protein PilV Regulator
  KCG55_RS10470 (KCG55_10545) pilJ 2198501..2199436 (+) 936 WP_254322997.1 pilus assembly protein PilW Machinery gene
  KCG55_RS10475 (KCG55_10550) pilK 2199415..2199960 (+) 546 WP_254322998.1 pilus assembly protein Machinery gene
  KCG55_RS10480 (KCG55_10555) pilL 2199965..2200453 (+) 489 WP_254322999.1 PilX family type IV pilin Machinery gene
  KCG55_RS10485 (KCG55_10560) - 2200506..2201126 (-) 621 WP_254323000.1 Smr/MutS family protein -
  KCG55_RS10490 (KCG55_10565) - 2201263..2201640 (+) 378 WP_254323001.1 hypothetical protein -
  KCG55_RS10495 (KCG55_10570) trpE 2201776..2203251 (+) 1476 WP_254323002.1 anthranilate synthase component I -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23976.23 Da        Isoelectric Point: 8.4513

>NTDB_id=487022 KCG55_RS10465 WP_254322996.1 2197848..2198498(+) (pilV) [Neisseria subflava strain HP0015]
MNITNPTHLRSFKGRLKTSSTSFTPKLQSGMTLIEVLIAMFVLAIGVLALLAVQLRTVSNVRESENQTTVAQITQNLIEG
MLINPTLSEETDTTGEKTSRYKKSYDAYLKSDSKQTAKFEAKMTKTQLAQAQIAQFKADLAKALPEAQVFSTICKDSSGA
EPTFEENRFNAKCDGKGDTTIVKVLWLQDVEEENSAKNLNTSGHHVVYTYQSRVRD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=487022 KCG55_RS10465 WP_254322996.1 2197848..2198498(+) (pilV) [Neisseria subflava strain HP0015]
ATGAACATTACTAATCCTACTCATCTCAGATCATTTAAAGGCCGTCTGAAAACGAGCTCAACAAGCTTTACCCCAAAACT
TCAATCAGGTATGACCCTGATTGAAGTTTTGATTGCCATGTTTGTCCTTGCTATCGGCGTACTCGCCCTGCTGGCTGTTC
AATTGCGTACCGTATCCAACGTACGTGAGTCTGAAAATCAAACCACAGTCGCCCAAATTACACAAAATCTGATTGAAGGC
ATGCTCATTAATCCGACGCTTTCTGAAGAAACCGATACTACAGGGGAAAAAACCTCCCGTTATAAAAAATCCTATGATGC
CTACCTAAAATCCGACTCTAAACAAACTGCAAAATTTGAAGCCAAAATGACCAAAACCCAACTTGCACAGGCTCAAATTG
CACAGTTTAAAGCCGATTTAGCTAAAGCCCTTCCCGAAGCCCAAGTCTTCTCGACCATCTGCAAAGATTCTTCCGGCGCA
GAGCCGACTTTCGAAGAAAATAGGTTTAACGCAAAATGCGATGGCAAAGGCGATACAACCATCGTGAAAGTTTTATGGTT
GCAAGATGTTGAAGAAGAAAATAGCGCAAAAAATCTCAACACATCGGGGCATCACGTTGTCTATACCTACCAATCACGCG
TAAGAGACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

49

92.593

0.454
  pilV/pilI Neisseria gonorrhoeae MS11

48.98

90.741

0.444