Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KCG56_RS09675 Genome accession   NZ_CP073116
Coordinates   1999430..2000014 (-) Length   194 a.a.
NCBI ID   WP_254321276.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0073     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1994430..2005014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS09645 (KCG56_09690) nadA 1994481..1995593 (-) 1113 WP_254321272.1 quinolinate synthase NadA -
  KCG56_RS09650 (KCG56_09695) - 1995750..1996688 (+) 939 WP_254321273.1 hypothetical protein -
  KCG56_RS09655 (KCG56_09700) nadC 1996762..1997643 (+) 882 WP_254321274.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KCG56_RS09665 (KCG56_09710) - 1998421..1999128 (-) 708 WP_254321275.1 hypothetical protein -
  KCG56_RS09670 (KCG56_09715) - 1999183..1999416 (-) 234 WP_003686650.1 hypothetical protein -
  KCG56_RS09675 (KCG56_09720) ruvA 1999430..2000014 (-) 585 WP_254321276.1 Holliday junction branch migration protein RuvA Machinery gene
  KCG56_RS09680 (KCG56_09725) - 2000113..2000832 (-) 720 WP_254321277.1 septal ring lytic transglycosylase RlpA family protein -
  KCG56_RS09685 (KCG56_09730) trmL 2000881..2001345 (-) 465 WP_254321278.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  KCG56_RS09690 (KCG56_09735) - 2001410..2002126 (-) 717 WP_254321279.1 ComF family protein -
  KCG56_RS09695 (KCG56_09740) bioH 2002125..2002871 (+) 747 WP_254321280.1 pimeloyl-ACP methyl ester esterase BioH -
  KCG56_RS09700 (KCG56_09745) - 2002927..2003721 (+) 795 WP_254321281.1 class I SAM-dependent methyltransferase -
  KCG56_RS09705 (KCG56_09750) - 2003836..2004084 (-) 249 WP_003686612.1 BolA family protein -
  KCG56_RS09710 (KCG56_09755) - 2004211..2004540 (-) 330 WP_094192864.1 FKBP-type peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20774.86 Da        Isoelectric Point: 5.7559

>NTDB_id=486943 KCG56_RS09675 WP_254321276.1 1999430..2000014(-) (ruvA) [Neisseria subflava strain TT0073]
MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGEAVHLYTQLVVREDAHLLFGFASAEERATFRQLVKVSG
IGAKTALGILSAMNADELAQSIAEEDVKRLSSAPGIGKKTAERMVLELRGKLVSHTVSDGLFAPDAVADESQDIINTLLA
LGYNEREAKAATKGIPKGTEVGEGVRLALKNLLK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=486943 KCG56_RS09675 WP_254321276.1 1999430..2000014(-) (ruvA) [Neisseria subflava strain TT0073]
ATGATCAGCAGGCTTACAGGCAAATTGATTGAGAAAAATCCGCCGCAGGTCGTTATCGACGTCAACGGCGTCGGTTATGA
AGCCGACGTTTCCATGCAGACTTTCTACAACCTGCCCTCCGTTGGCGAAGCCGTCCATCTCTACACCCAGCTTGTCGTCC
GCGAAGACGCGCATTTGCTGTTTGGTTTCGCCTCAGCCGAGGAACGCGCCACCTTCCGCCAACTGGTCAAAGTCAGCGGC
ATCGGTGCCAAAACCGCATTGGGCATTTTGTCGGCCATGAATGCCGACGAGCTGGCGCAATCCATTGCCGAAGAAGACGT
CAAACGCCTCTCTTCCGCCCCCGGCATCGGCAAGAAAACCGCCGAACGCATGGTGTTGGAACTGCGCGGCAAACTTGTAT
CCCATACCGTTTCAGACGGCCTGTTTGCCCCTGATGCCGTTGCCGACGAAAGCCAAGACATCATCAACACCCTGCTTGCC
CTCGGCTACAACGAACGCGAAGCCAAAGCTGCTACCAAAGGCATTCCCAAAGGTACGGAAGTCGGCGAAGGCGTGCGCCT
GGCCTTGAAAAACCTGCTCAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(151-192)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

38.5

100

0.397
  ruvA Streptococcus pneumoniae D39

38.5

100

0.397
  ruvA Streptococcus pneumoniae TIGR4

38

100

0.392