Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   KCG56_RS03175 Genome accession   NZ_CP073116
Coordinates   646402..647049 (-) Length   215 a.a.
NCBI ID   WP_254321880.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0073     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 641402..652049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS03145 (KCG56_03160) trpE 641660..643135 (-) 1476 WP_254321875.1 anthranilate synthase component I -
  KCG56_RS03150 (KCG56_03165) - 643271..643648 (-) 378 WP_254321876.1 hypothetical protein -
  KCG56_RS03155 (KCG56_03170) - 643785..644405 (+) 621 WP_254321877.1 Smr/MutS family protein -
  KCG56_RS03160 (KCG56_03175) pilL 644459..644947 (-) 489 WP_254321878.1 PilX family type IV pilin Machinery gene
  KCG56_RS03165 (KCG56_03180) pilK 644952..645497 (-) 546 WP_137040873.1 pilus assembly protein Machinery gene
  KCG56_RS03170 (KCG56_03185) pilJ 645476..646399 (-) 924 WP_254321879.1 pilus assembly protein PilW Machinery gene
  KCG56_RS03175 (KCG56_03190) pilV 646402..647049 (-) 648 WP_254321880.1 type IV pilus modification protein PilV Regulator
  KCG56_RS03180 (KCG56_03195) pilH 647065..647730 (-) 666 WP_254321881.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KCG56_RS03185 (KCG56_03200) dnaB 647889..649295 (-) 1407 WP_070460859.1 replicative DNA helicase -
  KCG56_RS03190 (KCG56_03205) - 649450..650031 (+) 582 WP_254321882.1 superoxide dismutase -
  KCG56_RS03195 (KCG56_03210) - 650255..651796 (+) 1542 WP_254321883.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23735.92 Da        Isoelectric Point: 8.4398

>NTDB_id=486911 KCG56_RS03175 WP_254321880.1 646402..647049(-) (pilV) [Neisseria subflava strain TT0073]
MNITNPTHLRSFKGRLKTSSTSFTPKLQSGMTLIEVLIAMFVLAIGVLALLAVQLRTVSNVRESENQTTVAQITQNLIEG
MLINPTLSEETDTTGEKTSRYKKSYDAYLKSDSKQTGKFEAKMSKAQLAQAQIAQFKADLTKALPEAQVFSTICKDSSGA
EPTYENGFNAKCDGKGDTTIVKVLWLQDVEEENSAKNLNTSGHHVVYTYQSRVRD

Nucleotide


Download         Length: 648 bp        

>NTDB_id=486911 KCG56_RS03175 WP_254321880.1 646402..647049(-) (pilV) [Neisseria subflava strain TT0073]
ATGAACATTACTAATCCTACTCATCTCAGATCATTTAAAGGCCGTCTGAAAACAAGCTCAACAAGCTTTACCCCAAAACT
TCAATCAGGTATGACCCTGATTGAAGTTTTGATTGCCATGTTTGTCCTTGCCATCGGTGTGCTTGCCCTTCTGGCTGTCC
AACTGCGTACCGTATCCAACGTGCGCGAGTCTGAAAATCAAACCACCGTCGCCCAAATTACGCAAAATCTGATTGAAGGC
ATGCTCATTAACCCAACGCTCTCTGAAGAAACCGATACTACAGGGGAAAAAACCTCCCGTTATAAAAAATCCTATGATGC
CTATCTAAAATCCGACTCTAAACAAACTGGAAAATTTGAAGCCAAAATGAGCAAAGCCCAACTTGCACAGGCTCAAATTG
CACAGTTTAAGGCCGACTTAACCAAAGCCCTTCCCGAAGCCCAAGTGTTCTCAACCATCTGCAAAGATTCTTCCGGTGCA
GAGCCGACTTACGAAAATGGGTTTAACGCAAAATGCGATGGCAAAGGCGACACGACCATCGTGAAAGTTTTATGGTTGCA
AGATGTCGAAGAAGAAAATAGCGCAAAAAATCTCAACACATCGGGGCATCACGTTGTCTATACCTACCAATCACGCGTAA
GAGACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

49

93.023

0.456
  pilV/pilI Neisseria gonorrhoeae MS11

49.49

91.163

0.451