Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KCG54_RS11465 Genome accession   NZ_CP073115
Coordinates   2380282..2380866 (-) Length   194 a.a.
NCBI ID   WP_254324233.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0077     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2375282..2385866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS11435 (KCG54_11445) - 2375380..2376318 (+) 939 WP_254324229.1 hypothetical protein -
  KCG54_RS11440 (KCG54_11450) nadC 2376393..2377274 (+) 882 WP_254324230.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KCG54_RS11445 (KCG54_11455) - 2377644..2378651 (-) 1008 WP_254324231.1 IS5 family transposase -
  KCG54_RS11455 (KCG54_11465) - 2379271..2379978 (-) 708 WP_254324232.1 hypothetical protein -
  KCG54_RS11460 - 2380033..2380266 (-) 234 Protein_2224 methionine-binding protein -
  KCG54_RS11465 (KCG54_11470) ruvA 2380282..2380866 (-) 585 WP_254324233.1 Holliday junction branch migration protein RuvA Machinery gene
  KCG54_RS11470 (KCG54_11475) - 2380965..2381684 (-) 720 WP_254324234.1 septal ring lytic transglycosylase RlpA family protein -
  KCG54_RS11475 (KCG54_11480) trmL 2381734..2382198 (-) 465 WP_070461542.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  KCG54_RS11480 (KCG54_11485) - 2382263..2382979 (-) 717 WP_254324235.1 ComF family protein -
  KCG54_RS11485 (KCG54_11490) bioH 2382978..2383724 (+) 747 WP_254324236.1 pimeloyl-ACP methyl ester esterase BioH -
  KCG54_RS11490 (KCG54_11495) - 2383780..2384574 (+) 795 WP_254325026.1 class I SAM-dependent methyltransferase -
  KCG54_RS11495 (KCG54_11500) - 2384720..2384968 (-) 249 WP_003686612.1 BolA family protein -
  KCG54_RS11500 (KCG54_11505) - 2385095..2385424 (-) 330 WP_094192864.1 FKBP-type peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20834.91 Da        Isoelectric Point: 5.7559

>NTDB_id=486891 KCG54_RS11465 WP_254324233.1 2380282..2380866(-) (ruvA) [Neisseria subflava strain TT0077]
MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVVREDAHLLFGFASAEERATFRQLVKVSG
IGAKTALGILSAMNADELAQAVAEEDVKRLSSAPGIGKKTAERMVLELRGKLVSHTVSDGLFAPDAVTDESQDIINTLLA
LGYNEREAKAATKSIPKGTEVGEGVRLALKNLLK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=486891 KCG54_RS11465 WP_254324233.1 2380282..2380866(-) (ruvA) [Neisseria subflava strain TT0077]
ATGATCAGCAGGCTCACAGGCAAATTGATTGAGAAAAATCCGCCGCAGGTCGTTATCGACGTCAACGGCGTCGGTTATGA
AGCCGACGTTTCCATGCAGACTTTCTACAACCTACCCTCCGTTGGCGAAACCGTCCATCTCTACACCCAGCTTGTCGTCC
GCGAAGACGCGCATTTGCTGTTTGGTTTCGCCTCAGCCGAGGAACGCGCCACCTTCCGCCAACTGGTCAAAGTCAGCGGC
ATCGGTGCTAAAACCGCATTGGGCATTTTGTCGGCCATGAATGCCGACGAGCTGGCGCAAGCCGTCGCCGAAGAAGACGT
CAAACGCCTCTCCTCCGCCCCCGGTATCGGCAAGAAAACCGCCGAGCGCATGGTATTGGAACTGCGCGGCAAACTCGTGT
CCCATACCGTTTCAGACGGCCTGTTTGCCCCTGATGCCGTTACCGATGAAAGCCAAGACATCATCAACACCCTGCTTGCC
CTCGGTTATAACGAACGCGAAGCCAAAGCCGCCACCAAAAGCATTCCCAAAGGCACGGAAGTCGGCGAAGGCGTGCGCCT
GGCCTTGAAAAACCTGCTCAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(151-192)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

38

100

0.392
  ruvA Streptococcus pneumoniae D39

38

100

0.392
  ruvA Streptococcus pneumoniae TIGR4

37.5

100

0.387