Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   KCG54_RS06525 Genome accession   NZ_CP073115
Coordinates   1352021..1352668 (+) Length   215 a.a.
NCBI ID   WP_254323725.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0077     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1347021..1357668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS06505 (KCG54_06555) - 1347275..1348816 (-) 1542 WP_070608251.1 OFA family MFS transporter -
  KCG54_RS06510 (KCG54_06560) - 1349040..1349621 (-) 582 WP_070460856.1 superoxide dismutase -
  KCG54_RS06515 (KCG54_06565) dnaB 1349776..1351182 (+) 1407 WP_254323723.1 replicative DNA helicase -
  KCG54_RS06520 (KCG54_06570) pilH 1351340..1352005 (+) 666 WP_254323724.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KCG54_RS06525 (KCG54_06575) pilV 1352021..1352668 (+) 648 WP_254323725.1 type IV pilus modification protein PilV Regulator
  KCG54_RS06530 (KCG54_06580) pilJ 1352671..1353606 (+) 936 WP_254323726.1 pilus assembly protein PilW Machinery gene
  KCG54_RS06535 (KCG54_06585) pilK 1353585..1354130 (+) 546 WP_254323727.1 pilus assembly protein Machinery gene
  KCG54_RS06540 (KCG54_06590) pilL 1354135..1354623 (+) 489 WP_254323728.1 PilX family type IV pilin Machinery gene
  KCG54_RS06545 (KCG54_06595) - 1354675..1355295 (-) 621 WP_254323729.1 Smr/MutS family protein -
  KCG54_RS06550 (KCG54_06600) - 1355432..1355809 (+) 378 WP_101755531.1 hypothetical protein -
  KCG54_RS06555 (KCG54_06605) trpE 1355945..1357420 (+) 1476 WP_254323730.1 anthranilate synthase component I -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23759.99 Da        Isoelectric Point: 8.4398

>NTDB_id=486860 KCG54_RS06525 WP_254323725.1 1352021..1352668(+) (pilV) [Neisseria subflava strain TT0077]
MNITNPTHLRSFKGRLKTSPTSFTPKLQSGMTLIEVLIAMFVLAIGVLALLAVQLRTVSNVRESENQTSVAQITQNLIEG
MLINPTLSEETDTTGEKTSRYKKSYDAYLKSDSKQTAKFEAKMTKAQLAQAQIAQFKADLTKALPEAQVFSTICKDSSGA
EPTYENGFNAKCDGKGDTTIVKVLWLQDVEEENSAKNLNTSGHHVVYTYQSRVRD

Nucleotide


Download         Length: 648 bp        

>NTDB_id=486860 KCG54_RS06525 WP_254323725.1 1352021..1352668(+) (pilV) [Neisseria subflava strain TT0077]
ATGAACATTACTAATCCTACTCATCTCAGATCATTTAAAGGCCGTCTGAAAACAAGTCCAACAAGCTTTACCCCAAAACT
TCAATCAGGCATGACCCTGATTGAAGTTTTGATTGCCATGTTTGTCCTTGCCATCGGTGTGCTGGCCCTTCTGGCTGTCC
AACTGCGTACCGTATCCAACGTGCGCGAGTCTGAAAATCAAACCAGCGTCGCCCAAATTACGCAAAATCTGATTGAAGGC
ATGCTCATTAACCCAACGCTCTCTGAAGAAACCGATACTACAGGGGAAAAAACCTCCCGTTATAAAAAATCCTATGATGC
CTATCTAAAATCCGACTCTAAACAAACTGCAAAATTTGAAGCCAAAATGACTAAAGCGCAACTTGCGCAGGCGCAAATTG
CCCAGTTTAAGGCTGACTTAACCAAAGCCCTTCCCGAAGCCCAAGTCTTCTCGACCATCTGCAAAGATTCTTCCGGCGCA
GAGCCAACTTACGAAAATGGGTTTAATGCAAAATGCGATGGCAAAGGCGACACGACCATCGTGAAAGTTTTATGGTTGCA
AGATGTCGAAGAAGAAAATAGCGCAAAAAATCTCAACACATCGGGGCATCACGTTGTCTATACCTACCAATCACGCGTAA
GAGACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

49

93.023

0.456
  pilV/pilI Neisseria gonorrhoeae MS11

48.469

91.163

0.442