NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	IHE26_RS01985	Genome accession	NZ_CP062196
Coordinates	416287..417123 (-)	Length	278 a.a.
NCBI ID	WP_225624448.1	Uniprot ID	-
Organism	Plesiomonas shigelloides strain P5462
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 411287..422123

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHE26_RS01965 (IHE26_01965)	mutT	413664..414098 (+)	435	WP_010862610.1	8-oxo-dGTP diphosphatase MutT	-
IHE26_RS01970 (IHE26_01970)	yacG	414168..414359 (-)	192	WP_039046505.1	DNA gyrase inhibitor YacG	-
IHE26_RS01975 (IHE26_01975)	zapD	414544..415296 (-)	753	WP_064977165.1	cell division protein ZapD	-
IHE26_RS01980 (IHE26_01980)	coaE	415677..416285 (-)	609	WP_064977166.1	dephospho-CoA kinase	-
IHE26_RS01985 (IHE26_01985)	pilD	416287..417123 (-)	837	WP_225624448.1	prepilin peptidase	Machinery gene
IHE26_RS01990 (IHE26_01990)	-	417410..418450 (+)	1041	WP_192437097.1	GMP reductase	-
IHE26_RS01995 (IHE26_01995)	-	418648..419202 (+)	555	WP_010862604.1	YbhB/YbcL family Raf kinase inhibitor-like protein	-
IHE26_RS02000 (IHE26_02000)	-	419343..419987 (-)	645	Protein_388	IS1595 family transposase	-
IHE26_RS02005 (IHE26_02005)	-	420068..420604 (-)	537	WP_192437098.1	septation protein IspZ	-
IHE26_RS02010 (IHE26_02010)	-	420652..420960 (-)	309	WP_192437099.1	PqqD family protein	-
IHE26_RS02015 (IHE26_02015)	-	420983..421204 (-)	222	WP_192437100.1	hypothetical protein	-
IHE26_RS02020 (IHE26_02020)	-	421201..421407 (-)	207	WP_192437101.1	hypothetical protein	-

Sequence

Protein

Download Length: 278 a.a. Molecular weight: 30884.74 Da Isoelectric Point: 7.1043

                                >NTDB_id=486821 IHE26_RS01985 WP_225624448.1 416287..417123(-) (pilD) [Plesiomonas shigelloides strain P5462]

MDGTLLIAFAALFGLLIGSFLNVVIYRYPLMLERRWHLECAEQFPELTPPADAPRFDLILPGSHCPHCQHPVRWFDNLPI

LSWLVLRGHCRHCQAPISKRYPAIELLTALVFALPVALWGLQIWSVACALFGAVLITASMIDLDRMWLPDSLTQPLLWAG

LLLAWGSYSPLSLHDAVLGAAVGYLSLWSLFWMFKLLTGKEGMGRGDFVLMAALCAWSGPTQLLLIALLASVCGLVYAVI

ARKTQQAIPFGPWLALGGWISLLFSDTIYAHYFALMGY

Nucleotide

Download Length: 837 bp

                                >NTDB_id=486821 IHE26_RS01985 WP_225624448.1 416287..417123(-) (pilD) [Plesiomonas shigelloides strain P5462]

TTGGACGGAACCCTGCTCATTGCCTTTGCGGCGCTTTTTGGCTTGCTGATCGGCAGCTTTCTCAATGTCGTGATCTACCG

CTATCCACTGATGTTGGAGCGGCGCTGGCACCTTGAATGTGCCGAACAATTCCCCGAACTCACTCCACCGGCCGATGCAC

CGCGCTTTGACTTGATCCTGCCCGGCTCTCACTGCCCACATTGCCAGCATCCAGTGCGCTGGTTTGATAACCTGCCTATA

CTGTCGTGGTTGGTACTGCGTGGTCATTGCCGCCATTGTCAGGCCCCAATCAGTAAACGCTATCCAGCCATTGAACTGCT

CACCGCGCTGGTTTTTGCTCTGCCTGTCGCGCTGTGGGGGTTACAGATTTGGAGCGTCGCATGCGCCTTGTTTGGTGCGG

TGCTGATCACCGCCAGCATGATTGACTTAGATAGAATGTGGTTGCCCGACAGCCTCACCCAACCGCTATTATGGGCCGGT

TTATTACTGGCATGGGGCAGTTACTCGCCGTTATCCCTGCATGATGCGGTATTGGGCGCCGCGGTGGGCTATTTGAGCCT

ATGGAGCCTGTTTTGGATGTTCAAATTGCTGACCGGCAAAGAAGGCATGGGGCGCGGTGATTTTGTCTTGATGGCCGCAC

TCTGCGCTTGGAGTGGCCCGACCCAACTGCTGCTGATTGCCCTGCTCGCCTCGGTGTGTGGGCTGGTATATGCCGTGATT

GCGCGTAAGACGCAGCAGGCTATCCCATTTGGCCCATGGCTGGCCTTGGGTGGCTGGATCAGCCTGCTGTTTAGTGACAC

CATATACGCTCACTATTTTGCACTGATGGGATATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(12-115)

Type IV leader peptidase family (Peptidase_A24)

(131-238)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	55.147	97.842	0.54
pilD	Vibrio campbellii strain DS40M4	50.542	99.64	0.504
pilD	Acinetobacter baumannii D1279779	45.818	98.921	0.453
pilD	Acinetobacter nosocomialis M2	45.091	98.921	0.446
pilD	Neisseria gonorrhoeae MS11	44.528	95.324	0.424

Detailed information NTG0486821