Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KCG52_RS06030 Genome accession   NZ_CP073114
Coordinates   1271316..1271900 (-) Length   194 a.a.
NCBI ID   WP_254343358.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1266316..1276900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS06000 (KCG52_05980) asd 1266444..1267559 (-) 1116 WP_049333106.1 aspartate-semialdehyde dehydrogenase -
  KCG52_RS06005 (KCG52_05985) - 1267800..1268372 (+) 573 WP_049333109.1 RDD family protein -
  KCG52_RS06010 (KCG52_05990) - 1268462..1269784 (+) 1323 WP_254343354.1 murein transglycosylase A -
  KCG52_RS06020 (KCG52_06000) - 1270307..1271014 (-) 708 WP_254343356.1 hypothetical protein -
  KCG52_RS06025 (KCG52_06005) - 1271069..1271302 (-) 234 WP_049335660.1 hypothetical protein -
  KCG52_RS06030 (KCG52_06010) ruvA 1271316..1271900 (-) 585 WP_254343358.1 Holliday junction branch migration protein RuvA Machinery gene
  KCG52_RS06035 (KCG52_06015) - 1271999..1272718 (-) 720 WP_070695227.1 septal ring lytic transglycosylase RlpA family protein -
  KCG52_RS06040 (KCG52_06020) trmL 1272767..1273231 (-) 465 WP_254343361.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  KCG52_RS06045 (KCG52_06025) - 1273296..1274012 (-) 717 WP_254343363.1 ComF family protein -
  KCG52_RS06050 (KCG52_06030) bioH 1274011..1274757 (+) 747 WP_063076319.1 pimeloyl-ACP methyl ester esterase BioH -
  KCG52_RS06055 (KCG52_06035) - 1274813..1275607 (+) 795 WP_254343365.1 methyltransferase -
  KCG52_RS06060 (KCG52_06040) - 1275753..1276001 (-) 249 WP_003686612.1 BolA family protein -
  KCG52_RS06065 (KCG52_06045) - 1276128..1276457 (-) 330 WP_094192864.1 FKBP-type peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20804.88 Da        Isoelectric Point: 5.7559

>NTDB_id=486799 KCG52_RS06030 WP_254343358.1 1271316..1271900(-) (ruvA) [Neisseria subflava strain HP0048]
MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVVREDAHLLFGFASAEERATFRQLVKVSG
IGAKTALGILSAMNADELAQAVAEEDVKRLSSAPGIGKKTAERMVLELRGKLVSHTVSDGLFAPDAVADESQDIINTLLA
LGYNEREAKAATKSIPKGTEVGEGVRLALKNLLK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=486799 KCG52_RS06030 WP_254343358.1 1271316..1271900(-) (ruvA) [Neisseria subflava strain HP0048]
ATGATCAGCAGGCTTACAGGCAAATTGATTGAGAAAAATCCGCCGCAGGTCGTTATCGACGTCAACGGCGTCGGTTATGA
AGCCGACGTTTCCATGCAGACTTTCTACAACCTGCCCTCCGTTGGCGAAACCGTCCATCTCTACACCCAGCTTGTCGTCC
GCGAAGACGCGCATTTGCTGTTTGGTTTCGCCTCAGCCGAGGAACGCGCCACCTTCCGCCAACTGGTCAAAGTCAGCGGC
ATCGGTGCTAAAACCGCATTGGGCATTTTATCGGCCATGAATGCCGACGAGCTGGCGCAAGCCGTCGCCGAAGAAGACGT
CAAACGCCTCTCCTCCGCCCCCGGCATCGGCAAAAAAACCGCCGAACGCATGGTGTTGGAACTACGCGGCAAACTCGTAT
CCCATACCGTTTCAGACGGCCTGTTTGCCCCTGATGCCGTTGCCGACGAAAGCCAAGACATCATCAACACCCTGCTTGCC
CTCGGCTACAACGAACGCGAAGCCAAAGCCGCCACCAAAAGCATTCCCAAAGGCACGGAAGTCGGCGAAGGCGTACGCCT
GGCCTTGAAAAACCTGCTCAAATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-192)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

38.5

100

0.397
  ruvA Streptococcus pneumoniae D39

38.5

100

0.397
  ruvA Streptococcus pneumoniae TIGR4

38

100

0.392