Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   KCG52_RS03670 Genome accession   NZ_CP073114
Coordinates   774129..774770 (+) Length   213 a.a.
NCBI ID   WP_254345093.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 769129..779770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS03650 (KCG52_03630) - 769846..770910 (+) 1065 WP_254345086.1 DUF1176 domain-containing protein -
  KCG52_RS03655 (KCG52_03635) - 771035..771343 (+) 309 WP_254345088.1 accessory factor UbiK family protein -
  KCG52_RS03660 (KCG52_03640) comM 771357..772853 (+) 1497 WP_254345089.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KCG52_RS03665 (KCG52_03645) - 773008..774117 (+) 1110 WP_254345091.1 SPOR domain-containing protein -
  KCG52_RS03670 (KCG52_03650) dsbA1 774129..774770 (+) 642 WP_254345093.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  KCG52_RS03675 (KCG52_03655) - 774815..775639 (+) 825 WP_254345095.1 undecaprenyl-diphosphate phosphatase -
  KCG52_RS03680 (KCG52_03660) comP 775703..776116 (-) 414 WP_254345472.1 type IV pilin protein Machinery gene
  KCG52_RS03685 (KCG52_03665) comE 776380..776667 (-) 288 WP_004520163.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23722.49 Da        Isoelectric Point: 9.7717

>NTDB_id=486781 KCG52_RS03670 WP_254345093.1 774129..774770(+) (dsbA1) [Neisseria subflava strain HP0048]
MKQRMKQTIAALSLSLLSLSAQAATEGVDYTVLSRPIPQQQAGKIEVLEFFGYFCVHCYHLDPVLLQHSKTFAKDVSLRT
EHVVWMPEMLGLAKLAAAVNLSGLKYQANPVIFTAVYEQKINLADANVFRTWVGKQTSFDSKKLLQAYNNPAAASAAAKM
QQLTETYRIENTPTVIVGGKYKVNFNGSDWKAGMKTIDELIIKVRHEQSSKPL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=486781 KCG52_RS03670 WP_254345093.1 774129..774770(+) (dsbA1) [Neisseria subflava strain HP0048]
ATGAAGCAGCGTATGAAACAAACTATTGCCGCACTCAGCCTGAGCCTGCTCAGTCTGAGTGCGCAGGCTGCTACCGAAGG
CGTGGACTATACCGTTCTTAGTCGCCCTATCCCGCAGCAGCAAGCCGGAAAAATTGAAGTGCTAGAATTTTTCGGCTACT
TCTGCGTCCATTGTTACCATCTCGATCCGGTTTTGTTGCAACACAGCAAAACCTTCGCCAAAGATGTTTCCTTACGGACA
GAACACGTCGTTTGGATGCCTGAAATGTTGGGCTTGGCTAAATTAGCCGCTGCCGTCAATCTTTCAGGTTTAAAATATCA
GGCCAATCCAGTCATCTTCACAGCCGTTTACGAACAGAAGATTAACTTGGCTGATGCAAATGTATTCCGCACATGGGTCG
GTAAACAGACAAGTTTTGACAGTAAAAAACTGCTTCAAGCCTACAACAACCCTGCTGCCGCATCGGCTGCTGCAAAAATG
CAGCAATTGACGGAAACTTATCGAATTGAAAACACACCAACTGTCATTGTCGGTGGTAAATACAAAGTCAATTTCAACGG
TAGCGACTGGAAAGCCGGTATGAAAACCATAGACGAACTCATCATTAAAGTTCGCCACGAACAATCCTCAAAACCACTTT
AA

Domains

Predicted by InterProScan.

Thioredoxin (Thioredoxin_4)

(44-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

59.893

87.793

0.526
  dsbA2 Neisseria meningitidis MC58

59.563

85.915

0.512