Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   IF654_RS01925 Genome accession   NZ_CP062158
Coordinates   352731..353138 (+) Length   135 a.a.
NCBI ID   WP_048375337.1    Uniprot ID   A0AAX2HCX0
Organism   Pseudomonas lundensis strain 2T.2.5.2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 347731..358138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF654_RS01895 (IF654_09025) - 347799..348803 (-) 1005 WP_047278345.1 aspartate carbamoyltransferase catalytic subunit -
  IF654_RS01900 (IF654_09020) pyrR 348816..349334 (-) 519 WP_047278343.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  IF654_RS01905 (IF654_09015) ruvX 349417..349857 (-) 441 WP_047278341.1 Holliday junction resolvase RuvX -
  IF654_RS01910 (IF654_09010) - 349857..350429 (-) 573 WP_083333066.1 YqgE/AlgH family protein -
  IF654_RS01915 (IF654_09005) - 350532..351431 (-) 900 WP_047278337.1 energy transducer TonB -
  IF654_RS01920 (IF654_09000) gshB 351508..352461 (-) 954 WP_047278335.1 glutathione synthase -
  IF654_RS01925 (IF654_08995) pilG 352731..353138 (+) 408 WP_048375337.1 twitching motility response regulator PilG Regulator
  IF654_RS01930 (IF654_08990) pilH 353181..353558 (+) 378 WP_047281470.1 twitching motility response regulator PilH -
  IF654_RS01935 (IF654_08985) - 353569..354108 (+) 540 WP_047281469.1 chemotaxis protein CheW -
  IF654_RS01940 (IF654_08980) - 354162..356219 (+) 2058 WP_047283232.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15013.48 Da        Isoelectric Point: 9.1880

>NTDB_id=486552 IF654_RS01925 WP_048375337.1 352731..353138(+) (pilG) [Pseudomonas lundensis strain 2T.2.5.2]
MDKHSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFDALARIVDHHPHIIFVDIMMPRLDGYQTCALIKNHRSFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSRDELLNAIKAHVPGFTVVQNAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=486552 IF654_RS01925 WP_048375337.1 352731..353138(+) (pilG) [Pseudomonas lundensis strain 2T.2.5.2]
ATGGACAAGCATTCCAGCGCCTTGAAGGTGATGGTGATTGACGATTCGAAAACCATTCGCCGCACCGCTGAAACGTTGCT
CAAAAACGTTGGCTGCGAGGTGATCACCGCCGTTGACGGCTTCGATGCATTGGCCAGAATAGTCGACCATCATCCGCACA
TCATTTTTGTCGACATCATGATGCCGCGCCTTGATGGCTACCAGACCTGCGCACTGATCAAAAACCACCGTTCCTTCAAG
TCCACGCCGGTGATCATGCTGTCCTCCAAAGACGGCCTGTTCGACAAGGCAAAAGGGCGTATTGTCGGGTCTGATCAATT
TTTGACCAAACCCTTCAGTCGGGACGAGTTGCTCAATGCAATCAAGGCGCACGTGCCCGGTTTCACGGTTGTGCAAAACG
CTCACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.4

92.593

0.689
  vicR Streptococcus mutans UA159

38.889

93.333

0.363