Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KBU60_RS12745 Genome accession   NZ_CP073068
Coordinates   2732691..2733419 (+) Length   242 a.a.
NCBI ID   WP_212569271.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FB-11     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2727691..2738419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBU60_RS12730 (KBU60_12730) clpC 2728126..2730699 (-) 2574 WP_025502266.1 ATP-dependent chaperone ClpB Regulator
  KBU60_RS12735 (KBU60_12735) pgeF 2730847..2731575 (-) 729 WP_069501307.1 peptidoglycan editing factor PgeF -
  KBU60_RS12740 (KBU60_12740) rluD 2731577..2732554 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KBU60_RS12745 (KBU60_12745) comL 2732691..2733419 (+) 729 WP_212569271.1 outer membrane protein assembly factor BamD Machinery gene
  KBU60_RS12750 (KBU60_12750) - 2733554..2735035 (+) 1482 WP_069501309.1 lytic transglycosylase F -
  KBU60_RS12755 (KBU60_12755) raiA 2735366..2735692 (+) 327 WP_069501310.1 ribosome-associated translation inhibitor RaiA -
  KBU60_RS12760 (KBU60_12760) pheA 2735936..2737114 (+) 1179 WP_005468591.1 prephenate dehydratase -
  KBU60_RS12765 (KBU60_12765) yjjX 2737139..2737672 (+) 534 WP_069501420.1 inosine/xanthosine triphosphatase -
  KBU60_RS12770 (KBU60_12770) trpR 2737721..2738032 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27834.72 Da        Isoelectric Point: 5.4388

>NTDB_id=486529 KBU60_RS12745 WP_212569271.1 2732691..2733419(+) (comL) [Vibrio parahaemolyticus strain FB-11]
MNRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=486529 KBU60_RS12745 WP_212569271.1 2732691..2733419(+) (comL) [Vibrio parahaemolyticus strain FB-11]
ATGAACCGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCTACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTAGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAACAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCACTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405