Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KBU60_RS03385 Genome accession   NZ_CP073068
Coordinates   716413..717792 (+) Length   459 a.a.
NCBI ID   WP_140287825.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FB-11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 711413..722792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBU60_RS03370 (KBU60_03370) - 712208..712813 (-) 606 WP_140287826.1 YtjB family periplasmic protein -
  KBU60_RS03375 (KBU60_03375) serB 712905..713885 (+) 981 WP_020841223.1 phosphoserine phosphatase -
  KBU60_RS03380 (KBU60_03380) - 713928..716276 (-) 2349 WP_140124634.1 PilZ domain-containing protein -
  KBU60_RS03385 (KBU60_03385) radA/sms 716413..717792 (+) 1380 WP_140287825.1 DNA repair protein RadA Machinery gene
  KBU60_RS03390 (KBU60_03390) fusA 718009..720099 (+) 2091 WP_005456593.1 elongation factor G -
  KBU60_RS03395 (KBU60_03395) - 720300..721226 (-) 927 WP_140287824.1 LysR substrate-binding domain-containing protein -
  KBU60_RS03400 (KBU60_03400) - 721325..721534 (+) 210 WP_005494095.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49267.73 Da        Isoelectric Point: 7.3941

>NTDB_id=486490 KBU60_RS03385 WP_140287825.1 716413..717792(+) (radA/sms) [Vibrio parahaemolyticus strain FB-11]
MAKAKRAYVCNDCGADFPRWQGQCNACGAWNTITEVRIAASPTVARNERLSGYAGSATESKVQTLSEIDLQEVPRFTSGF
KELDRVLGGGVVPGAAILIGGNPGAGKSTLLLQTMCTLSGLMPTLYVTGEESLQQVAMRASRLGLPKEHLKMLSETNVDK
ICQIAEKEQPRIMVIDSIQVMHVSDVQSSPGSVAQVRESATALTRYAKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSV
LLDGGTDCRFRTLRSHKNRFGAVNELGVFAMTGQGLKEVSNPSAIFLSRGEEETSGSSVMVVWEGTRPLLVEIQALVDYS
QLANPRRVTVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALVMALLSSFRDRPLPKDVVVFGEVG
LAGEIRPVPSGQERLNEAFKHGFKKAIVPAANMPKGGIPGMQIHGVKKLSEAIEAFDEL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=486490 KBU60_RS03385 WP_140287825.1 716413..717792(+) (radA/sms) [Vibrio parahaemolyticus strain FB-11]
ATGGCGAAAGCAAAACGAGCGTATGTTTGTAATGATTGTGGCGCGGATTTTCCACGTTGGCAGGGACAATGTAATGCGTG
TGGTGCATGGAATACGATCACAGAGGTGCGCATTGCTGCTTCGCCAACCGTTGCTCGCAATGAACGCTTAAGCGGTTATG
CTGGTTCGGCGACAGAATCGAAAGTCCAAACCTTATCTGAAATCGATCTGCAAGAAGTGCCGCGATTCACTAGTGGTTTT
AAAGAGCTCGATCGTGTGCTTGGTGGTGGTGTCGTACCTGGTGCGGCGATTCTGATAGGTGGTAACCCTGGAGCGGGTAA
GTCGACTTTGCTTCTTCAAACTATGTGTACGTTATCGGGGCTGATGCCGACACTTTACGTTACGGGTGAGGAATCGCTTC
AACAGGTTGCGATGCGCGCGTCTCGTCTTGGTCTGCCAAAAGAGCACCTGAAGATGCTATCAGAAACCAACGTCGATAAA
ATTTGCCAAATTGCAGAGAAAGAGCAGCCCAGAATTATGGTGATTGACTCGATTCAGGTTATGCACGTTTCTGATGTTCA
ATCGTCACCGGGCAGTGTTGCTCAGGTGCGAGAATCTGCGACGGCACTGACTCGATACGCAAAACAGAACAATGTTGCGG
TATTTATTGTTGGTCACGTAACGAAAGATGGTACTCTTGCCGGCCCTAAAGTCCTTGAGCACATTATTGACTGTTCTGTC
TTGCTTGATGGCGGAACAGATTGTCGTTTCCGTACACTGCGCAGCCACAAAAACCGTTTTGGTGCGGTAAATGAATTAGG
CGTGTTTGCGATGACGGGGCAGGGACTGAAAGAAGTAAGTAACCCATCGGCGATTTTCCTTTCTCGTGGCGAAGAAGAGA
CGTCAGGATCTTCGGTCATGGTTGTGTGGGAAGGTACACGTCCTCTATTAGTAGAGATTCAAGCGCTGGTGGACTACTCG
CAATTGGCAAACCCTCGTCGCGTAACGGTTGGTTTGGAGCAGAATCGTCTCTCCTTATTATTAGCCGTACTGCATAAGCA
TGGTGGTCTGCAAATGGCCGATCAAGACGTGTTTGTGAATGTAGTCGGCGGCGTTAAGGTAACAGAAACCAGTGCGGATC
TTGCTTTAGTGATGGCGTTACTATCAAGCTTTCGCGATCGTCCGTTGCCAAAAGATGTGGTGGTATTTGGCGAAGTTGGT
TTAGCTGGCGAGATTCGTCCGGTACCTAGTGGCCAAGAGCGTTTGAACGAGGCATTTAAGCACGGCTTCAAAAAGGCAAT
TGTCCCGGCTGCTAATATGCCAAAAGGTGGCATTCCGGGGATGCAAATCCACGGCGTTAAGAAGTTGTCAGAGGCTATTG
AGGCTTTTGACGAGCTGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(83-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.491

99.346

0.462
  radA Streptococcus mitis SK321

44.298

99.346

0.44
  radA Streptococcus pneumoniae Rx1

43.736

99.129

0.434
  radA Streptococcus pneumoniae D39

43.736

99.129

0.434
  radA Streptococcus pneumoniae R6

43.736

99.129

0.434
  radA Streptococcus pneumoniae TIGR4

43.736

99.129

0.434
  radA Streptococcus mitis NCTC 12261

43.736

99.129

0.434