Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   IHE41_RS00230 Genome accession   NZ_CP062153
Coordinates   40638..41252 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 17-VB00214     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 35638..46252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHE41_RS00220 (IHE41_00220) aceF 36889..38814 (+) 1926 WP_264401021.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  IHE41_RS00225 (IHE41_00225) lpdA 39083..40510 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  IHE41_RS00230 (IHE41_00230) opaR 40638..41252 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  IHE41_RS00235 (IHE41_00235) hpt 41571..42101 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  IHE41_RS00240 (IHE41_00240) can 42175..42843 (-) 669 WP_005462578.1 carbonate dehydratase -
  IHE41_RS00245 (IHE41_00245) - 43127..44797 (+) 1671 WP_021450011.1 SulP family inorganic anion transporter -
  IHE41_RS00250 (IHE41_00250) - 45049..45966 (+) 918 WP_017447686.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=486488 IHE41_RS00230 WP_005479697.1 40638..41252(-) (opaR) [Vibrio parahaemolyticus strain 17-VB00214]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=486488 IHE41_RS00230 WP_005479697.1 40638..41252(-) (opaR) [Vibrio parahaemolyticus strain 17-VB00214]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTACGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGACCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701