Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   TL13_RS04795 Genome accession   NC_021213
Coordinates   962479..963549 (-) Length   356 a.a.
NCBI ID   WP_015646837.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 957479..968549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS04770 (TL13_0945) relB 958694..958933 (+) 240 WP_015646833.1 type II toxin-antitoxin system RelB family antitoxin -
  TL13_RS04775 (TL13_0946) - 958974..959180 (+) 207 WP_413787540.1 type II toxin-antitoxin system RelE family toxin -
  TL13_RS04780 (TL13_0947) braR 959218..959886 (+) 669 WP_024381849.1 response regulator transcription factor Regulator
  TL13_RS04785 (TL13_0948) - 959883..960824 (+) 942 WP_015646835.1 sensor histidine kinase -
  TL13_RS04790 (TL13_0949) - 960901..962409 (+) 1509 WP_015646836.1 phosphomannomutase/phosphoglucomutase -
  TL13_RS04795 (TL13_0950) xerS 962479..963549 (-) 1071 WP_015646837.1 tyrosine recombinase XerS Machinery gene
  TL13_RS10780 (TL13_0951) - 964209..965069 (-) 861 WP_015646838.1 hypothetical protein -
  TL13_RS10090 (TL13_0952) - 965090..966247 (-) 1158 WP_015646839.1 trypsin-like peptidase domain-containing protein -
  TL13_RS04810 (TL13_0953) - 966827..967567 (-) 741 WP_015646840.1 DUF3307 domain-containing protein -
  TL13_RS04815 (TL13_0954) - 967571..968239 (-) 669 WP_015646841.1 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41544.73 Da        Isoelectric Point: 9.3635

>NTDB_id=48647 TL13_RS04795 WP_015646837.1 962479..963549(-) (xerS) [Streptococcus suis TL13]
MRRELLLEKIDQLKEIMPWFVLEYYQSKLAVPYSFTTLYEYLKEYRRFFEWLQDSDLVTVERIADIPLDVLEHLTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLNYVDKEYQVNLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDS
VNVAGFAKPYLEAYMSIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=48647 TL13_RS04795 WP_015646837.1 962479..963549(-) (xerS) [Streptococcus suis TL13]
ATGAGACGCGAGTTATTATTGGAAAAAATTGATCAACTAAAAGAAATTATGCCTTGGTTTGTTCTGGAATATTATCAGTC
CAAGTTGGCGGTCCCTTATAGTTTTACAACCTTATATGAATACTTGAAAGAATACCGTCGTTTTTTTGAGTGGCTACAGG
ATTCGGATTTGGTCACTGTTGAGCGGATTGCTGACATTCCGCTGGATGTTCTGGAACATTTGACAAAAAAAGATATGGAG
GCCTTTATTCTTTATCTGCGGGAGCGTCCGCTGCTGAACGCCAATACCACGCAGAATGGTGTGTCGCAGACCACCATTAA
CCGTACCCTCTCGGCTCTTTCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAGAATGAGCAGGGCGAGCCCTACTTCT
ACCGCAATGTCATGAAAAAGGTGTCTACTAAGAAGAAGAAGGAAACCTTGGCAGCGCGGGCGGAGAACATCAAGCAAAAG
CTCTTTTTGGGAGATGAAACCATGGAGTTTTTGAACTATGTGGACAAAGAATACCAGGTCAATCTCTCCAAACGTGCTCT
CTCCTCCTTCCAGAAAAATAAGGAGCGGGATTTGGCGATTCTGGCGCTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAAG
CGGTGAATTTGGATCTTCGAGATGTAAACCTCAATATGATGATTATCGAAGTAACTCGTAAGGGTGGTAAGCGGGACTCG
GTCAATGTGGCTGGGTTTGCTAAGCCCTATCTGGAAGCCTATATGAGCATCCGTCAGCAACGCTACAAGGCTGAAAAAAC
GGATACAGCCTTCTTCCTGTCTGAGTACCGTGGTCTGCCCAATCGTATCGACGCTTCTTCTATTGAAAAAATGGTGGCCA
AGTACTCTGCGGACTTCAAGATACGTGTGACACCCCACAAACTCCGTCACACATTGGCAACTCGTCTCTACGACGCCACC
AAGTCGCAAGTTCTAGTCAGTCATCAGCTGGGCCATGCCAATACCCAGGTCACCGATCTCTACACCCATATCGTCAACGA
TGAACAGAAAAATGCTCTGGATCAGTTGTGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.146

100

0.831

Multiple sequence alignment