Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   IF561_RS02605 Genome accession   NZ_CP062150
Coordinates   558799..560202 (+) Length   467 a.a.
NCBI ID   WP_005461534.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 19-VB00998     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 553799..565202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF561_RS02585 (IF561_02600) rsxB 554310..554906 (-) 597 WP_005480813.1 electron transport complex subunit RsxB -
  IF561_RS02590 (IF561_02605) rsxA 554910..555488 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  IF561_RS02600 (IF561_02615) uvrB 556479..558509 (+) 2031 WP_005494496.1 excinuclease ABC subunit UvrB -
  IF561_RS02605 (IF561_02620) luxO 558799..560202 (+) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  IF561_RS02610 (IF561_02625) luxU 560205..560543 (+) 339 WP_020838698.1 quorum-sensing phosphorelay protein LuxU -
  IF561_RS02615 (IF561_02630) - 560620..561513 (-) 894 WP_017447831.1 YvcK family protein -
  IF561_RS02620 (IF561_02635) moaA 561809..562798 (+) 990 WP_264401090.1 GTP 3',8-cyclase MoaA -
  IF561_RS02625 (IF561_02640) moaB 562901..563413 (+) 513 WP_005482393.1 molybdenum cofactor biosynthesis protein B -
  IF561_RS02630 (IF561_02645) moaC 563440..563919 (+) 480 WP_005461493.1 cyclic pyranopterin monophosphate synthase MoaC -
  IF561_RS02635 (IF561_02650) moaD 563916..564173 (+) 258 WP_021484877.1 molybdopterin synthase sulfur carrier subunit -
  IF561_RS02640 (IF561_02655) moaE 564175..564630 (+) 456 WP_045545721.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52173.71 Da        Isoelectric Point: 6.2547

>NTDB_id=486444 IF561_RS02605 WP_005461534.1 558799..560202(+) (luxO) [Vibrio parahaemolyticus strain 19-VB00998]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=486444 IF561_RS02605 WP_005461534.1 558799..560202(+) (luxO) [Vibrio parahaemolyticus strain 19-VB00998]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTTTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCACCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCAGCCATACCTAAAGACTTAATTGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
GTTCCAGAAAGTGGGTTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGACCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTATTGCGTAATA
TCGTGGTGCTCAACAACGGCAAAGAAATTACGCTAGATATGTTGCCACCGCCGCTGAATCAACCATTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
GCAAGCGATTGAGGCGTGTGACGGTAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

95.931

0.839
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368