Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   TL13_RS03265 Genome accession   NC_021213
Coordinates   650625..651221 (+) Length   198 a.a.
NCBI ID   WP_002935848.1    Uniprot ID   A0ABV2ES67
Organism   Streptococcus suis TL13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 645625..656221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS03250 (TL13_0642) - 646927..647481 (+) 555 WP_015646626.1 ATP-binding cassette domain-containing protein -
  TL13_RS03255 (TL13_0643) - 647715..648449 (+) 735 WP_015646627.1 ATP-binding cassette domain-containing protein -
  TL13_RS03260 (TL13_0644) pbp2b 648541..650616 (+) 2076 WP_015646628.1 penicillin-binding protein PBP2B -
  TL13_RS03265 (TL13_0645) recR 650625..651221 (+) 597 WP_002935848.1 recombination mediator RecR Machinery gene
  TL13_RS03270 (TL13_0646) - 651326..652372 (+) 1047 WP_015646629.1 D-alanine--D-alanine ligase -
  TL13_RS03275 - 652460..652840 (+) 381 WP_024401154.1 OsmC family protein -
  TL13_RS03280 (TL13_0647) - 652842..653918 (+) 1077 WP_015646630.1 ABC transporter permease -
  TL13_RS03285 (TL13_0648) - 653928..654596 (+) 669 WP_015646631.1 ABC transporter ATP-binding protein -
  TL13_RS03295 (TL13_0649) - 654796..656157 (+) 1362 WP_015646632.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4757

>NTDB_id=48632 TL13_RS03265 WP_002935848.1 650625..651221(+) (recR) [Streptococcus suis TL13]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=48632 TL13_RS03265 WP_002935848.1 650625..651221(+) (recR) [Streptococcus suis TL13]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCGGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAATCGTACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49

Multiple sequence alignment