Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NCGM2_RS20300 Genome accession   NC_017549
Coordinates   4418443..4419078 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa NCGM2.S1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4413443..4424078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCGM2_RS20270 (NCGM2_4091) murB 4414541..4415560 (-) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -
  NCGM2_RS20275 (NCGM2_4092) - 4415557..4416021 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  NCGM2_RS20280 (NCGM2_4093) kdsB 4416021..4416785 (-) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NCGM2_RS20285 (NCGM2_4094) - 4416785..4416970 (-) 186 WP_003091157.1 Trm112 family protein -
  NCGM2_RS20290 (NCGM2_4095) lpxK 4417008..4418006 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  NCGM2_RS20295 (NCGM2_4096) - 4418006..4418446 (-) 441 WP_003091161.1 ExbD/TolR family protein -
  NCGM2_RS20300 (NCGM2_4097) exbB 4418443..4419078 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NCGM2_RS20305 (NCGM2_4098) comA 4419151..4421376 (-) 2226 WP_014603928.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NCGM2_RS20310 (NCGM2_4099) - 4421507..4422040 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  NCGM2_RS20315 (NCGM2_4100) - 4422128..4423372 (-) 1245 WP_003091166.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=48625 NCGM2_RS20300 WP_003091163.1 4418443..4419078(-) (exbB) [Pseudomonas aeruginosa NCGM2.S1]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=48625 NCGM2_RS20300 WP_003091163.1 4418443..4419078(-) (exbB) [Pseudomonas aeruginosa NCGM2.S1]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment