Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   TL13_RS02630 Genome accession   NC_021213
Coordinates   520055..520789 (+) Length   244 a.a.
NCBI ID   WP_015646547.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 515055..525789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS02605 (TL13_0515) - 515555..515863 (-) 309 WP_015646545.1 DUF1827 family protein -
  TL13_RS02610 (TL13_0516) - 515918..516379 (-) 462 WP_002938708.1 NUDIX hydrolase -
  TL13_RS02615 (TL13_0517) clpE 516565..518793 (-) 2229 WP_015646546.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  TL13_RS02620 (TL13_0518) - 519017..519247 (+) 231 WP_002938704.1 DUF1797 family protein -
  TL13_RS02625 (TL13_0519) - 519373..520062 (+) 690 WP_002938702.1 amino acid ABC transporter permease -
  TL13_RS02630 (TL13_0520) amiE 520055..520789 (+) 735 WP_015646547.1 amino acid ABC transporter ATP-binding protein Regulator
  TL13_RS02635 (TL13_0521) - 520919..521767 (+) 849 WP_015646548.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  TL13_RS02645 (TL13_0522) - 523201..523500 (+) 300 WP_015646549.1 hypothetical protein -
  TL13_RS02650 (TL13_0523) lepB 523490..524092 (+) 603 WP_032504114.1 signal peptidase I -
  TL13_RS02655 (TL13_0524) - 524185..524496 (+) 312 WP_225533365.1 hypothetical protein -
  TL13_RS02660 (TL13_0525) - 524497..524886 (-) 390 Protein_470 transposase -
  TL13_RS02665 (TL13_0526) - 524854..525645 (+) 792 WP_041179379.1 class C sortase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26911.13 Da        Isoelectric Point: 4.7252

>NTDB_id=48626 TL13_RS02630 WP_015646547.1 520055..520789(+) (amiE) [Streptococcus suis TL13]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKTNAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=48626 TL13_RS02630 WP_015646547.1 520055..520789(+) (amiE) [Streptococcus suis TL13]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTTGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTGGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGCACAATGAACCTCT
TAGAAGTACCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCGAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGA
CGAATGCCTATCCACAAAGCCTTTCAGGTGGTCAGCAACAGCGAATCGCTATTGCACGTGGTCTGGCTATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTTATGCAGGATTTGGC
CAAGTCAGGGATGACTATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365

Multiple sequence alignment