Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IG194_RS18585 Genome accession   NZ_CP062122
Coordinates   4097766..4098263 (+) Length   165 a.a.
NCBI ID   WP_009617188.1    Uniprot ID   A0A127MME3
Organism   Pseudomonas sp. ADPe     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4092766..4103263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG194_RS18575 (IG194_18585) uvrA 4093292..4096147 (-) 2856 WP_009617186.1 excinuclease ABC subunit UvrA -
  IG194_RS18580 (IG194_18590) - 4096359..4097747 (+) 1389 WP_058488427.1 MFS transporter -
  IG194_RS18585 (IG194_18595) ssb 4097766..4098263 (+) 498 WP_009617188.1 single-stranded DNA-binding protein Machinery gene
  IG194_RS18590 (IG194_18600) - 4098963..4099160 (+) 198 WP_009617189.1 hypothetical protein -
  IG194_RS18595 (IG194_18605) - 4099204..4100214 (-) 1011 Protein_3691 hypothetical protein -
  IG194_RS18600 (IG194_18610) - 4100469..4102910 (-) 2442 WP_058488428.1 TonB-dependent siderophore receptor -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18229.15 Da        Isoelectric Point: 5.2781

>NTDB_id=486168 IG194_RS18585 WP_009617188.1 4097766..4098263(+) (ssb) [Pseudomonas sp. ADPe]
MARGVNKVILVGNVGGDPETRYLPNGNAVTNVTLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIVAEYVRKGSQIYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPGAGGDDAPRAPREPQQRPQQAPRPAPQQQAAPAPQPAADYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=486168 IG194_RS18585 WP_009617188.1 4097766..4098263(+) (ssb) [Pseudomonas sp. ADPe]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGCGATCCGGAAACCCGCTACCTGCCCAACGGCAA
CGCGGTGACCAACGTCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAACGTACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAAATCGTCGCCGAGTACGTGCGCAAGGGCTCGCAGATCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGACCGCTACACCACCGAGATCGTGGTAGACATCAACGG
CAACATGCAACTGCTCGGCGGCCGTCCGGGCGCCGGTGGCGACGACGCCCCGCGCGCGCCGCGCGAACCCCAGCAGCGCC
CGCAACAGGCCCCGCGCCCGGCGCCGCAACAACAGGCCGCCCCGGCTCCACAACCGGCCGCCGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127MME3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.6
  ssb Glaesserella parasuis strain SC1401

49.727

100

0.552
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.491
  ssb Neisseria meningitidis MC58

46.023

100

0.491