Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   IGB10_RS11610 Genome accession   NZ_CP062074
Coordinates   2439997..2440434 (-) Length   145 a.a.
NCBI ID   WP_007612572.1    Uniprot ID   -
Organism   Bacillus velezensis strain BSC16a     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2434997..2445434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGB10_RS11560 (IGB10_11560) sinI 2435380..2435553 (+) 174 WP_032874029.1 anti-repressor SinI Regulator
  IGB10_RS11565 (IGB10_11565) sinR 2435587..2435922 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  IGB10_RS11570 (IGB10_11570) tasA 2435970..2436755 (-) 786 WP_032874027.1 biofilm matrix protein TasA -
  IGB10_RS11575 (IGB10_11575) sipW 2436820..2437404 (-) 585 WP_032874025.1 signal peptidase I SipW -
  IGB10_RS11580 (IGB10_11580) tapA 2437376..2438047 (-) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  IGB10_RS11585 (IGB10_11585) - 2438306..2438635 (+) 330 WP_032874021.1 DUF3889 domain-containing protein -
  IGB10_RS11590 (IGB10_11590) - 2438676..2438855 (-) 180 WP_022552966.1 YqzE family protein -
  IGB10_RS11595 (IGB10_11595) comGG 2438912..2439289 (-) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  IGB10_RS11600 (IGB10_11600) comGF 2439290..2439790 (-) 501 WP_223204419.1 competence type IV pilus minor pilin ComGF -
  IGB10_RS11605 (IGB10_11605) comGE 2439699..2440013 (-) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  IGB10_RS11610 (IGB10_11610) comGD 2439997..2440434 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  IGB10_RS11615 (IGB10_11615) comGC 2440424..2440732 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  IGB10_RS11620 (IGB10_11620) comGB 2440737..2441774 (-) 1038 WP_032874014.1 competence type IV pilus assembly protein ComGB Machinery gene
  IGB10_RS11625 (IGB10_11625) comGA 2441761..2442831 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  IGB10_RS11630 (IGB10_11630) - 2443028..2443978 (-) 951 WP_032874012.1 magnesium transporter CorA family protein -
  IGB10_RS11635 (IGB10_11635) - 2444124..2445425 (+) 1302 WP_032874010.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16254.76 Da        Isoelectric Point: 10.1850

>NTDB_id=486095 IGB10_RS11610 WP_007612572.1 2439997..2440434(-) (comGD) [Bacillus velezensis strain BSC16a]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=486095 IGB10_RS11610 WP_007612572.1 2439997..2440434(-) (comGD) [Bacillus velezensis strain BSC16a]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGATTCGCTTCATATTACACTTGTAACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATAACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

55.479

100

0.559