Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   KBW97_RS05315 Genome accession   NZ_CP072986
Coordinates   1112131..1112613 (-) Length   160 a.a.
NCBI ID   WP_001407480.1    Uniprot ID   P52140
Organism   Escherichia coli strain T159A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1107131..1117613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBW97_RS05300 ypjF 1111217..1111546 (-) 330 WP_001094400.1 type IV toxin-antitoxin system toxin YpjF -
  KBW97_RS05305 yfjZ 1111567..1111884 (-) 318 WP_000072690.1 type IV toxin-antitoxin system YeeU family antitoxin -
  KBW97_RS05310 ypjJ 1111922..1112122 (-) 201 WP_001395452.1 DUF987 domain-containing protein -
  KBW97_RS05315 radC 1112131..1112613 (-) 483 WP_001407480.1 RadC family protein Machinery gene
  KBW97_RS05320 yfjX 1112622..1113080 (-) 459 WP_000211841.1 antirestriction protein -
  KBW97_RS05325 - 1113183..1113367 (-) 185 Protein_1053 DUF905 family protein -
  KBW97_RS05330 yfjW 1113978..1115681 (-) 1704 WP_000896263.1 protein YfjW -
  KBW97_RS05335 - 1115823..1116832 (+) 1010 Protein_1055 arsenic transporter -
  KBW97_RS23280 - 1116845..1116997 (+) 153 Protein_1056 glutaredoxin domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17963.75 Da        Isoelectric Point: 8.6079

>NTDB_id=486092 KBW97_RS05315 WP_001407480.1 1112131..1112613(-) (radC) [Escherichia coli strain T159A]
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=486092 KBW97_RS05315 WP_001407480.1 1112131..1112613(-) (radC) [Escherichia coli strain T159A]
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52140

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65

0.375