Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IGB12_RS00040 Genome accession   NZ_CP062068
Coordinates   9214..9732 (+) Length   172 a.a.
NCBI ID   WP_004896330.1    Uniprot ID   A0A1Y4ICE7
Organism   Lactobacillus johnsonii strain GHZ10a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4214..14732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGB12_RS00025 (IGB12_00025) gyrB 4230..6197 (+) 1968 WP_192006026.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  IGB12_RS00030 (IGB12_00030) gyrA 6208..8697 (+) 2490 WP_004898285.1 DNA gyrase subunit A -
  IGB12_RS00035 (IGB12_00035) rpsF 8884..9180 (+) 297 WP_004896331.1 30S ribosomal protein S6 -
  IGB12_RS00040 (IGB12_00040) ssb 9214..9732 (+) 519 WP_004896330.1 single-stranded DNA-binding protein Machinery gene
  IGB12_RS00045 (IGB12_00045) rpsR 9757..9993 (+) 237 WP_003649728.1 30S ribosomal protein S18 -
  IGB12_RS00050 (IGB12_00050) - 10087..11004 (+) 918 WP_011161252.1 magnesium transporter CorA family protein -
  IGB12_RS00055 (IGB12_00055) - 11112..13130 (+) 2019 WP_192006028.1 DHH family phosphoesterase -
  IGB12_RS00060 (IGB12_00060) rplI 13142..13597 (+) 456 WP_003651632.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18600.32 Da        Isoelectric Point: 4.7531

>NTDB_id=486007 IGB12_RS00040 WP_004896330.1 9214..9732(+) (ssb) [Lactobacillus johnsonii strain GHZ10a]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=486007 IGB12_RS00040 WP_004896330.1 9214..9732(+) (ssb) [Lactobacillus johnsonii strain GHZ10a]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGCCGGATTCAAACTAGA
ACGTACGATGATAAGGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAGAATCGTCAGACTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAATAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCCGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y4ICE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.069

100

0.628
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.568

100

0.517