Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JAB4_RS06125 Genome accession   NZ_CP062062
Coordinates   1338871..1339740 (-) Length   289 a.a.
NCBI ID   WP_070219386.1    Uniprot ID   A0A853SXU5
Organism   Janthinobacterium sp. HH102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1333871..1344740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAB4_RS06085 (JAB4_012010) argJ 1333874..1335112 (+) 1239 WP_070219358.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  JAB4_RS06090 (JAB4_012020) - 1335109..1335990 (+) 882 WP_070219359.1 ATP-binding protein -
  JAB4_RS06095 (JAB4_012030) - 1335987..1336409 (+) 423 WP_070219360.1 NUDIX domain-containing protein -
  JAB4_RS06100 (JAB4_012040) - 1336531..1336740 (+) 210 WP_070219361.1 hypothetical protein -
  JAB4_RS06105 (JAB4_012050) - 1336747..1337169 (+) 423 WP_139143048.1 type II toxin-antitoxin system VapC family toxin -
  JAB4_RS06110 (JAB4_012060) yacG 1337173..1337364 (-) 192 WP_034785391.1 DNA gyrase inhibitor YacG -
  JAB4_RS06115 (JAB4_012070) zapD 1337383..1338138 (-) 756 WP_070219363.1 cell division protein ZapD -
  JAB4_RS06120 (JAB4_012080) coaE 1338201..1338848 (-) 648 WP_070219364.1 dephospho-CoA kinase -
  JAB4_RS06125 (JAB4_012090) pilD 1338871..1339740 (-) 870 WP_070219386.1 A24 family peptidase Machinery gene
  JAB4_RS06130 (JAB4_012100) - 1340026..1340616 (-) 591 WP_070219365.1 DUF2867 domain-containing protein -
  JAB4_RS06135 (JAB4_012110) - 1340833..1341474 (-) 642 WP_070219366.1 DJ-1/PfpI family protein -
  JAB4_RS06140 (JAB4_012120) - 1341608..1341997 (-) 390 WP_070219367.1 hypothetical protein -
  JAB4_RS06145 (JAB4_012130) - 1342146..1343489 (-) 1344 WP_070219368.1 AarF/ABC1/UbiB kinase family protein -
  JAB4_RS06150 (JAB4_012140) - 1343486..1344220 (-) 735 WP_070219369.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 30909.76 Da        Isoelectric Point: 7.7407

>NTDB_id=485979 JAB4_RS06125 WP_070219386.1 1338871..1339740(-) (pilD) [Janthinobacterium sp. HH102]
MLQDTLLFAAPGNLPVALVAALFGLIVGSFLNVVIHRVPKMMERDSANYVAEESGLPLPHTDRYNLMLPHSNCTACGHRI
TAMENIPVISYLLLRGKCSACKAPISVRYPLVELLTGALSALLIWHFGSGWTGLATLVFAWLLIAMTFIDADTQMLPDDL
TFPLLWAGLLVNINGTFVPLQDAVIGAAAGYLALWAVYWAFKLATGKEGMGYGDFKLLAALGAWLGWTMLPTIILLSSVV
GAVVGIGLIVFAKRGRDKPIPFGPYLAAAGLIALLYGTPLSRLTLGLTG

Nucleotide


Download         Length: 870 bp        

>NTDB_id=485979 JAB4_RS06125 WP_070219386.1 1338871..1339740(-) (pilD) [Janthinobacterium sp. HH102]
ATGCTGCAAGATACCCTGCTGTTCGCCGCGCCCGGCAATTTGCCCGTCGCCCTCGTCGCCGCCCTGTTCGGCCTGATCGT
CGGCAGCTTCCTCAACGTGGTGATCCACCGCGTGCCGAAAATGATGGAGCGCGACTCCGCCAATTACGTGGCGGAAGAAA
GCGGCTTGCCCTTGCCGCACACGGACCGCTACAACCTGATGCTGCCGCACTCGAACTGCACCGCTTGCGGCCACCGCATC
ACGGCCATGGAAAACATCCCCGTCATCAGTTACCTGCTGCTGCGTGGCAAATGCAGCGCCTGCAAGGCCCCCATCTCCGT
GCGCTATCCGCTGGTGGAACTGCTGACGGGCGCGCTGTCGGCCCTGCTGATCTGGCATTTCGGCAGCGGCTGGACGGGCC
TGGCAACGCTCGTGTTTGCCTGGCTGCTGATCGCCATGACCTTCATCGATGCCGATACGCAAATGCTGCCGGACGACCTC
ACCTTCCCCCTGCTGTGGGCCGGCTTGCTGGTCAATATCAACGGCACTTTCGTGCCGCTACAGGACGCCGTCATCGGCGC
GGCCGCCGGCTACCTGGCCCTGTGGGCCGTGTACTGGGCCTTCAAGCTGGCGACAGGCAAGGAGGGAATGGGCTATGGTG
ACTTCAAATTGCTGGCGGCGCTCGGTGCGTGGCTGGGCTGGACCATGTTGCCGACGATCATATTGTTGTCGTCGGTGGTC
GGCGCCGTGGTCGGCATCGGCCTGATCGTGTTTGCCAAGCGGGGACGCGACAAACCGATTCCCTTCGGCCCCTACCTGGC
GGCGGCAGGCCTGATCGCGCTGCTGTACGGCACGCCCCTGTCGCGGCTCACGCTGGGCCTGACCGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-246)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A853SXU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

56.522

95.502

0.54
  pilD Vibrio campbellii strain DS40M4

56.489

90.657

0.512
  pilD Acinetobacter baumannii D1279779

47.387

99.308

0.471
  pilD Neisseria gonorrhoeae MS11

53.125

88.581

0.471
  pilD Acinetobacter nosocomialis M2

47.038

99.308

0.467