Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   I872_RS09965 Genome accession   NC_021175
Coordinates   2017995..2020544 (-) Length   849 a.a.
NCBI ID   WP_015605963.1    Uniprot ID   A0ABM5NMG8
Organism   Streptococcus cristatus AS 1.3089     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2012995..2025544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS09940 (I872_09965) - 2013563..2014069 (+) 507 WP_015605958.1 helix-turn-helix domain-containing protein -
  I872_RS09945 (I872_09970) - 2014053..2014628 (+) 576 WP_015605959.1 RDD family protein -
  I872_RS09950 (I872_09975) hexB 2014761..2016707 (-) 1947 WP_015605960.1 DNA mismatch repair endonuclease MutL Machinery gene
  I872_RS09955 (I872_09980) brsR 2016892..2017332 (+) 441 WP_015605961.1 LytTR family DNA-binding domain-containing protein Regulator
  I872_RS09960 (I872_09985) - 2017329..2017799 (+) 471 WP_015605962.1 DUF3021 family protein -
  I872_RS09965 (I872_09990) hexA 2017995..2020544 (-) 2550 WP_015605963.1 DNA mismatch repair protein MutS Machinery gene
  I872_RS09970 (I872_09995) argR 2020617..2021057 (-) 441 WP_015605964.1 arginine repressor -
  I872_RS09975 (I872_10000) argS 2021183..2022871 (+) 1689 WP_015605965.1 arginine--tRNA ligase -
  I872_RS09980 (I872_10005) - 2022923..2023186 (+) 264 WP_015605966.1 hypothetical protein -
  I872_RS09985 (I872_10010) nrdI 2023238..2023699 (-) 462 WP_015605967.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  I872_RS09990 (I872_10015) - 2023773..2024294 (-) 522 WP_231913940.1 lantibiotic ABC transporter permease -

Sequence


Protein


Download         Length: 849 a.a.        Molecular weight: 94825.26 Da        Isoelectric Point: 4.9265

>NTDB_id=48584 I872_RS09965 WP_015605963.1 2017995..2020544(-) (hexA) [Streptococcus cristatus AS 1.3089]
MAAEKLSPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPVPMAGVPYHSAQQYIDVLV
ESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGTVVDSNKPDSANNFLVALDYSDGLYGLAYMDLVTGEFQVTSLEDFAL
VCGEIRNLKAREVVLGYALPEGEEQVLAGQMNLLLSYVQTALDDVQLLDEELSPMERQAAGKLLEYVHRTQMRELSHLKK
VQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDETKTAMGGRMLRSWIQRPLIDEARIIQRQNVVEVFLDHFF
ERSDLTESLKGVYDIERLASRVSFGKTNPKDLLQLAATLGNVPQIKAILQGIGSPHLVPLIEGLDPIPELAGLISSAISP
DAPHVITEGNIIRTGFDETLDQYRLVLREGTGWIAELEVKERANSGISNLKIDYNKKDGYYFHVTNSQLAHVPSHFFRKA
TLKNSERFGTEELARIEGEMLEAREKSANLEYEIFMRIREEVGKYIQRLQALAQTLAAVDVLQSFAAVAEQQHLVRPVFT
AERRLQIEKGRHPVVEKVMGAQSYIPNSILLDQETDIQLITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPLFDA
IFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYHEL
TALENSLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPEKLLERADNILSHLESQDTGLGSELPAASR
PKQSQVAEQMSLFAEGPENPVLTELRDLDIYNMTPLEVMAAVAELKKKL

Nucleotide


Download         Length: 2550 bp        

>NTDB_id=48584 I872_RS09965 WP_015605963.1 2017995..2020544(-) (hexA) [Streptococcus cristatus AS 1.3089]
ATGGCAGCAGAAAAATTATCACCCGGTATGCAGCAGTATTTGGATATCAAAAAGGACTATCCAGATGCTTTTCTGCTCTT
TAGGATGGGAGATTTCTATGAGTTGTTTTATGATGATGCGGTCAATGCCGCCCAGATTTTAGAGATTTCTCTCACCAGCC
GAAATAAAAATGCAGAAAATCCTGTTCCCATGGCTGGAGTTCCCTATCATTCGGCACAGCAGTATATTGATGTTTTGGTC
GAATCAGGCTATAAGGTAGCGATTGCGGAGCAGATGGAAGATCCCAAGGAAGCCAAGGGAGTTGTTAAGCGGGAGGTCGT
TCAGGTTATCACGCCGGGGACGGTGGTGGACTCCAATAAGCCCGACTCTGCTAATAACTTTCTGGTGGCTCTGGATTACT
CAGATGGTCTCTATGGTCTAGCTTATATGGACTTGGTGACTGGTGAGTTTCAGGTGACTAGTTTAGAGGACTTTGCCTTG
GTCTGCGGGGAAATCCGCAATTTGAAAGCTAGGGAAGTGGTGCTGGGCTATGCCTTGCCAGAAGGTGAGGAGCAGGTCTT
GGCTGGACAGATGAACCTTTTACTGTCCTATGTACAGACAGCCTTGGACGATGTCCAGTTGCTGGACGAGGAGCTGTCTC
CGATGGAACGTCAGGCAGCGGGGAAACTGCTGGAGTACGTGCACCGGACCCAGATGAGGGAGCTCAGCCATTTGAAGAAG
GTTCAGCATTATGAAATCAAGGACTTTCTGCAAATGGATTATGCTACTAAGGCGAGTCTGGATTTGACGGAAAATGCTCG
CTCAGGCAAGAAGCACGGCAGTCTTTATTGGCTGATGGACGAGACCAAGACGGCCATGGGCGGACGTATGCTGCGCTCTT
GGATTCAGCGTCCGCTGATTGATGAAGCGCGAATTATCCAGCGGCAGAATGTCGTCGAGGTTTTTCTGGATCATTTCTTT
GAGCGGAGTGATTTGACGGAGAGCCTCAAGGGAGTCTATGATATCGAGCGGCTGGCTAGTCGAGTTTCTTTTGGTAAGAC
CAATCCCAAGGATCTGCTGCAGCTGGCAGCTACCCTGGGCAATGTGCCTCAGATTAAGGCTATTCTGCAAGGGATTGGCA
GCCCGCATCTAGTGCCTTTGATTGAGGGCTTGGATCCTATTCCAGAGTTGGCGGGCTTGATTAGCTCAGCTATTTCACCG
GATGCGCCCCATGTCATCACCGAGGGCAATATCATTCGGACCGGTTTTGATGAGACTTTGGATCAGTATCGACTTGTGCT
GAGGGAGGGGACCGGCTGGATTGCAGAGCTGGAAGTCAAAGAACGTGCCAACAGCGGCATCAGCAATCTAAAGATTGATT
ACAACAAAAAAGATGGTTACTATTTCCACGTGACCAATTCCCAGCTGGCTCATGTGCCCAGTCATTTCTTCCGCAAGGCG
ACCCTGAAAAATTCGGAGCGTTTCGGAACGGAGGAGCTGGCCCGAATTGAGGGAGAGATGTTGGAGGCGCGTGAAAAATC
TGCCAACTTGGAATACGAGATTTTCATGCGGATTCGCGAGGAAGTTGGCAAATATATCCAGCGCTTGCAGGCCTTGGCAC
AAACGCTGGCAGCTGTGGATGTCCTGCAGAGCTTTGCTGCGGTGGCAGAACAGCAGCATTTGGTGCGCCCTGTCTTTACT
GCGGAGCGCCGTCTGCAGATTGAAAAAGGCCGCCATCCTGTCGTAGAAAAGGTCATGGGTGCCCAAAGCTACATTCCAAA
TAGTATTCTGCTGGATCAGGAAACAGACATCCAGCTGATTACTGGGCCTAATATGAGCGGGAAATCGACTTATATGCGCC
AGCTGGCAATCATCGTCATCATGGCACAGATGGGATCTTATGTGCCCGCTCAGTCTGCCAGTCTGCCACTATTCGACGCG
ATTTTCACTCGCATCGGTGCAGCGGATGATTTGGTGTCCGGCCAGTCCACCTTTATGGTGGAGATGATGGAGGCCAATCG
GGCCATTCGACAGGCCAGCGAGCGTTCGCTCATTCTCTTTGATGAGCTGGGCCGTGGGACGGCTACTTACGATGGGATGG
CCTTGGCTCAGGCTATTATCGAGCATATTCATCACTATACTGGGGCCAAAACCCTCTTTGCTACCCACTATCACGAGCTG
ACAGCCTTAGAGAATAGCTTGGAGCATTTGGAAAATGTCCATGTGGCAACCTTGGAAAAGGACGGGCAGGTGACTTTCCT
GCATAAGATTGAGCCGGGTCCGGCTGACAAGTCCTACGGAATTCATGTGGCGAAGATTGCCGGACTTCCTGAGAAATTAC
TAGAGCGGGCGGATAACATTTTGAGTCATTTGGAGAGTCAGGACACTGGACTAGGCTCAGAGCTTCCTGCTGCATCCAGA
CCGAAGCAGTCACAAGTGGCTGAGCAGATGTCTCTTTTCGCAGAAGGACCGGAAAATCCAGTCCTAACTGAACTCCGAGA
CTTGGACATCTATAATATGACTCCCCTGGAAGTCATGGCGGCGGTAGCCGAGCTCAAGAAAAAGCTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

77.739

100

0.777

  mutS Pseudomonas stutzeri strain ATCC 17587

38.973

100

0.393


Multiple sequence alignment