Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KBP48_RS07245 Genome accession   NZ_CP072932
Coordinates   1602553..1603944 (+) Length   463 a.a.
NCBI ID   WP_071869675.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain BB08-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1597553..1608944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP48_RS07225 (KBP48_07225) - 1598091..1598633 (+) 543 WP_004083813.1 Dps family protein -
  KBP48_RS07230 (KBP48_07230) recQ 1598813..1600615 (+) 1803 WP_038229058.1 DNA helicase RecQ Machinery gene
  KBP48_RS07235 (KBP48_07235) - 1600738..1601217 (+) 480 WP_004083818.1 hypothetical protein -
  KBP48_RS07240 (KBP48_07240) - 1601418..1602383 (-) 966 WP_071869668.1 LLM class flavin-dependent oxidoreductase -
  KBP48_RS07245 (KBP48_07245) radA/sms 1602553..1603944 (+) 1392 WP_071869675.1 DNA repair protein RadA Machinery gene
  KBP48_RS07250 (KBP48_07250) trpA 1604185..1604991 (-) 807 WP_004083823.1 tryptophan synthase subunit alpha -
  KBP48_RS07255 (KBP48_07255) trpB 1605117..1606334 (-) 1218 WP_038229079.1 tryptophan synthase subunit beta -
  KBP48_RS07260 (KBP48_07260) - 1606836..1607498 (-) 663 WP_027700019.1 phosphoribosylanthranilate isomerase -
  KBP48_RS07265 (KBP48_07265) truA 1607495..1608265 (-) 771 WP_024749251.1 tRNA pseudouridine(38-40) synthase TruA -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49358.64 Da        Isoelectric Point: 7.6825

>NTDB_id=485823 KBP48_RS07245 WP_071869675.1 1602553..1603944(+) (radA/sms) [Xylella fastidiosa subsp. multiplex strain BB08-1]
MTKNAASKARIAYVCTECGTEYSKWQGQCTECGIWNCLSQITLGNAGSVKNPTMKHGNWTGQLDPPKITALKDVQHSEQA
RISTGIGEFDRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALARMASTLPTLYVTGEESLAQVAGRAVRLDLSLEGLNALA
ETGIESILQHASSARPRLIVADSVQTLWTEALTAAPGSVSQVRESAAQLVRYAKETGTTVFLVGHVTKEGGIAGPRVLEH
MVDAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMSEKGLKEVANPSAIFLSGRNSDQPGSCVMVTREGTRPLMVEVQ
ALVDTSPLSNPRRVTVGLEQNRLAMLLAVLHRHGNVLVGDQDVFINIVGGIRVQETAADLPVLLAVRSSLCNRALPEKTI
AFGEVGLSGEIRPVPNGEERLREAATHGFKHAIVPKANAPKSAIKDMQIIAVERLDQALEASY

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=485823 KBP48_RS07245 WP_071869675.1 1602553..1603944(+) (radA/sms) [Xylella fastidiosa subsp. multiplex strain BB08-1]
ATGACCAAAAACGCCGCAAGCAAAGCCAGGATTGCCTATGTCTGCACTGAATGCGGCACCGAATACAGCAAATGGCAGGG
ACAGTGCACCGAATGCGGCATCTGGAATTGCTTAAGCCAAATCACCCTCGGAAATGCAGGATCTGTCAAAAACCCAACCA
TGAAGCACGGCAATTGGACCGGTCAGCTCGACCCACCCAAGATCACCGCATTGAAGGACGTGCAACACAGCGAACAAGCA
CGCATCTCCACCGGCATTGGCGAGTTTGACCGCGTCCTAGGAGGCGGCCTGGTGGCAGGCGCGGTAGTCCTGATTGGTGG
CGATCCAGGCATCGGCAAATCCACATTGCTACTGCAAGCACTAGCACGGATGGCAAGCACCCTACCCACACTGTATGTGA
CGGGTGAAGAATCGCTGGCACAGGTCGCCGGACGTGCGGTGCGCCTGGATCTGTCCCTGGAGGGCTTAAACGCACTCGCA
GAAACCGGCATTGAATCAATCCTGCAACACGCCAGCAGCGCACGGCCACGACTGATTGTCGCCGACTCAGTACAGACCCT
ATGGACCGAAGCACTGACCGCAGCACCCGGTTCAGTCAGCCAAGTACGAGAAAGCGCCGCACAGCTAGTGCGCTACGCCA
AAGAAACCGGCACAACCGTGTTCCTGGTTGGCCATGTCACCAAAGAAGGTGGCATCGCCGGCCCACGCGTACTGGAGCAC
ATGGTAGATGCCGTGCTGTATTTTGAAGGCGAAAGCGGTAGCCGTTTCCGTCTCCTGCGGGCATTCAAAAATCGCTTTGG
AGCAGTCAACGAACTAGGCGTCTTTGCGATGAGCGAAAAAGGCTTGAAAGAGGTCGCCAATCCATCAGCCATTTTTTTAT
CCGGCAGAAACAGCGACCAACCAGGCAGCTGTGTGATGGTCACCCGTGAAGGTACACGCCCCCTGATGGTCGAAGTACAA
GCACTCGTCGATACCTCGCCACTGTCCAACCCACGCCGGGTGACCGTCGGGCTGGAACAAAATCGGCTAGCAATGCTGTT
AGCCGTGTTGCATCGTCACGGTAACGTCCTGGTTGGTGACCAAGACGTATTCATCAACATCGTTGGCGGCATCCGCGTTC
AAGAGACAGCCGCAGATCTACCTGTACTACTGGCGGTCCGGTCCTCGTTATGCAACCGGGCGCTGCCAGAAAAGACCATC
GCCTTTGGCGAAGTGGGTTTATCCGGTGAAATCCGCCCGGTCCCCAACGGCGAAGAGCGCCTCAGAGAAGCGGCAACACA
CGGCTTTAAGCACGCCATTGTGCCAAAAGCCAACGCACCCAAGAGTGCCATCAAGGACATGCAGATCATCGCCGTAGAAC
GCCTGGATCAGGCGCTGGAAGCAAGCTATTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(359-438)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-38)

KaiC (ATPase)

(82-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.415

98.92

0.449
  radA Streptococcus pneumoniae Rx1

42.702

99.136

0.423
  radA Streptococcus pneumoniae D39

42.702

99.136

0.423
  radA Streptococcus pneumoniae R6

42.702

99.136

0.423
  radA Streptococcus pneumoniae TIGR4

42.702

99.136

0.423
  radA Streptococcus mitis NCTC 12261

42.702

99.136

0.423
  radA Streptococcus mitis SK321

42.484

99.136

0.421