Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   KBP48_RS07230 Genome accession   NZ_CP072932
Coordinates   1598813..1600615 (+) Length   600 a.a.
NCBI ID   WP_038229058.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. multiplex strain BB08-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1593813..1605615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP48_RS07225 (KBP48_07225) - 1598091..1598633 (+) 543 WP_004083813.1 Dps family protein -
  KBP48_RS07230 (KBP48_07230) recQ 1598813..1600615 (+) 1803 WP_038229058.1 DNA helicase RecQ Machinery gene
  KBP48_RS07235 (KBP48_07235) - 1600738..1601217 (+) 480 WP_004083818.1 hypothetical protein -
  KBP48_RS07240 (KBP48_07240) - 1601418..1602383 (-) 966 WP_071869668.1 LLM class flavin-dependent oxidoreductase -
  KBP48_RS07245 (KBP48_07245) radA/sms 1602553..1603944 (+) 1392 WP_071869675.1 DNA repair protein RadA Machinery gene
  KBP48_RS07250 (KBP48_07250) trpA 1604185..1604991 (-) 807 WP_004083823.1 tryptophan synthase subunit alpha -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 67477.15 Da        Isoelectric Point: 8.3149

>NTDB_id=485822 KBP48_RS07230 WP_038229058.1 1598813..1600615(+) (recQ) [Xylella fastidiosa subsp. multiplex strain BB08-1]
MSTSSATQTVLQRVFGYDTFRGPQQAIIEHVAAGHDALVLMPTGGGKSLCYQVPALLRKGIGVVISPLIALMQDQVETLR
QLGVRAAYLNSTLDATQAQRIEHALVTADLDLLYIAPERLLTAHFLSLLERSQIALFAIDEAHCVSQWGHDFRPEYRQLT
VLHERWPHVPRIALTATADPPTQREIAERLDLSDAHHFISSFDRPNIRYTVVQKNNMRHQLQEFLSRHRNTAGIVYAMSR
RKTEEIAAYLCTQGYNALPYHAGLPAETRAKHQRCFLREEGIVMCATIAFGMGINKPDVRFVAHIDLPKSLEGYYQETGR
AGRDGEAAEAWMCYSLGDVVLLKQMIEQSEASEARKCVERAKLDHLLGYCESMQCRRQLLLSSFGETYPNPCGNCDNCLT
PATAWDATVLSQKALSCVYRTGQRFGVGHLIDILRGSKSQRILQLGHDQLSTYGIGRDVDERSWRSVFRQLIATHLLEVD
NEGYGGLRLTPSSRPVLKGERQVMMRRDQFIRERDRTGQRHGLSVLPEDLGLFNALHRLRAQLAKEQNVPAFVIFHDSTL
RHIAEQRPTNLNALSKISGIGSNKLTRYGHQLIELVLAQG

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=485822 KBP48_RS07230 WP_038229058.1 1598813..1600615(+) (recQ) [Xylella fastidiosa subsp. multiplex strain BB08-1]
ATGAGCACGTCTTCCGCCACCCAGACCGTTCTACAACGCGTCTTTGGCTACGACACCTTCCGTGGGCCCCAGCAAGCCAT
CATTGAGCATGTCGCTGCCGGCCACGATGCCTTGGTCCTGATGCCCACCGGGGGCGGCAAATCATTGTGCTACCAAGTGC
CTGCGCTGCTGCGCAAAGGCATCGGCGTCGTCATCTCGCCGCTGATTGCACTGATGCAAGACCAAGTCGAGACCCTACGT
CAGCTTGGCGTACGCGCCGCCTATCTCAACTCGACCCTAGATGCAACGCAGGCACAACGGATCGAACACGCTCTAGTCAC
CGCAGATCTAGACCTGCTGTATATCGCTCCGGAACGGTTACTCACTGCACACTTCTTATCGCTGCTGGAACGTAGCCAGA
TCGCTTTGTTCGCCATCGACGAAGCTCACTGCGTCTCACAGTGGGGACATGATTTCCGTCCCGAATACCGCCAACTCACC
GTACTTCATGAACGTTGGCCACACGTGCCTCGGATTGCACTGACCGCAACCGCCGACCCACCCACACAACGCGAAATTGC
TGAGCGCCTTGACCTAAGCGATGCGCATCACTTCATCAGCTCATTCGACCGCCCCAACATCCGCTACACAGTCGTACAGA
AAAACAATATGCGGCACCAACTACAAGAATTCCTCAGCCGCCATCGCAACACCGCAGGCATTGTCTACGCCATGTCACGG
CGCAAAACCGAAGAAATCGCCGCCTATCTGTGTACACAAGGCTACAACGCACTGCCTTACCATGCCGGCCTACCAGCCGA
AACACGGGCCAAGCACCAACGCTGCTTTCTGCGTGAAGAAGGGATTGTGATGTGTGCCACCATCGCCTTCGGCATGGGCA
TCAACAAACCTGATGTCCGCTTTGTCGCCCACATCGACCTCCCCAAATCACTGGAGGGTTATTACCAGGAAACCGGCCGC
GCCGGCCGCGATGGCGAAGCTGCAGAAGCATGGATGTGCTATAGCCTGGGAGACGTCGTACTGCTGAAACAAATGATCGA
ACAAAGCGAAGCCAGCGAAGCACGCAAGTGCGTAGAACGCGCCAAACTCGATCACCTGCTGGGCTACTGTGAATCAATGC
AATGCCGCCGCCAACTCTTACTGTCAAGCTTCGGGGAAACCTATCCAAACCCCTGTGGCAACTGTGACAACTGCCTGACC
CCAGCCACCGCCTGGGATGCCACCGTGCTCTCCCAAAAGGCGTTAAGTTGCGTCTACCGCACTGGCCAGCGCTTCGGGGT
TGGCCACCTAATCGACATACTACGTGGCAGTAAGAGCCAAAGAATATTGCAACTGGGTCATGACCAACTCAGCACCTACG
GCATCGGCCGTGACGTGGATGAACGCAGCTGGCGCAGTGTCTTTCGCCAACTCATCGCCACACACCTGTTGGAGGTCGAC
AACGAAGGCTACGGCGGCTTACGCCTGACCCCAAGCAGTCGTCCAGTCCTCAAAGGCGAACGCCAAGTCATGATGCGTCG
TGATCAGTTCATCCGTGAACGCGACCGTACCGGCCAACGTCACGGACTATCGGTCCTCCCGGAAGATCTGGGACTCTTCA
ATGCCCTGCATCGCTTACGTGCACAACTAGCCAAAGAACAAAACGTGCCGGCATTCGTGATCTTCCATGACAGCACCTTG
CGCCATATTGCCGAGCAACGCCCTACTAACCTCAATGCACTGAGCAAAATCAGCGGGATCGGCAGCAACAAACTGACACG
CTATGGCCATCAGTTAATTGAACTCGTACTTGCGCAAGGGTGA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-509)

DEAD/DEAH box helicase (DEAD)

(24-179)

RecQ zinc-binding (RecQ_Zn_bind)

(337-399)

Helicase conserved C-terminal domain (Helicase_C)

(220-324)

HRDC domain (HRDC)

(530-596)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.28

98.833

0.378