Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   IF690_RS27980 Genome accession   NZ_CP061943
Coordinates   6289961..6290368 (-) Length   135 a.a.
NCBI ID   WP_202701757.1    Uniprot ID   -
Organism   Pseudomonas sp. SK3(2021)     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6284961..6295368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF690_RS27965 (IF690_27955) - 6286840..6288876 (-) 2037 WP_252189582.1 methyl-accepting chemotaxis protein -
  IF690_RS27970 (IF690_27960) - 6289001..6289540 (-) 540 WP_202698243.1 chemotaxis protein CheW -
  IF690_RS27975 (IF690_27965) pilH 6289552..6289917 (-) 366 WP_007953328.1 twitching motility response regulator PilH -
  IF690_RS27980 (IF690_27970) pilG 6289961..6290368 (-) 408 WP_202701757.1 twitching motility response regulator PilG Regulator
  IF690_RS27985 (IF690_27975) gshB 6290605..6291561 (+) 957 WP_202698244.1 glutathione synthase -
  IF690_RS27990 (IF690_27980) - 6291682..6292581 (+) 900 WP_202698245.1 energy transducer TonB -
  IF690_RS27995 (IF690_27985) - 6292658..6293227 (+) 570 WP_053262979.1 YqgE/AlgH family protein -
  IF690_RS28000 (IF690_27990) ruvX 6293227..6293664 (+) 438 WP_009046019.1 Holliday junction resolvase RuvX -
  IF690_RS28005 (IF690_27995) pyrR 6293771..6294277 (+) 507 WP_202698246.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  IF690_RS28010 (IF690_28000) - 6294304..6295308 (+) 1005 WP_007929978.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14707.09 Da        Isoelectric Point: 7.1344

>NTDB_id=485667 IF690_RS27980 WP_202701757.1 6289961..6290368(-) (pilG) [Pseudomonas sp. SK3(2021)]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFEALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFAAVEQAY

Nucleotide


Download         Length: 408 bp        

>NTDB_id=485667 IF690_RS27980 WP_202701757.1 6289961..6290368(-) (pilG) [Pseudomonas sp. SK3(2021)]
ATGGAACAGCAATCCAGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAGACGATTCGCCGCACGGCCGAAACGCTGTT
GAAGAATGTGGGCTGTGAAGTCATCACCGCGGTCGACGGTTTCGAGGCCCTGGCCAAGATCGCCGACAACCACCCGGGCA
TCATTTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCACTGATCAAGAACAACAGCGCGTTCAAG
TCCACGCCGGTGATTATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCTGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGAGCGCGATCAAGGCCCATGTGCCGGGATTCGCCGCAGTAGAACAAG
CATATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385